PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016504239.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25531.7 Da PI: 8.9062 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 163 | 208 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq XP_016504239.1 163 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 208 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.148 | 157 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-16 | 160 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-11 | 161 | 210 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-15 | 162 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-13 | 163 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-10 | 163 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MGVSGYGTLK GGGGGGYRMA NVASGDSSPS SSRLKGHFSS FPSGTPSSLG MLSRISEVDN 60 ESSITTVPDD DKRRDGNSEA QFYNMGFPFT SWNDSPQLDN EGKLFANADQ IEEVGNRPPI 120 LSHHLSLPKT PAEIAAIEKL LHFQDTIPCK IRAKRGCATH PRSIAERVRR TRISERMRKL 180 QELVPNMDKQ TNTADMLDLA VEYIKDLQKQ YKTLTDHRAN CKCSAMQNQR V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 2e-71 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769873.1 | 1e-175 | PREDICTED: transcription factor bHLH130-like isoform X2 | ||||
Refseq | XP_016504239.1 | 1e-175 | PREDICTED: transcription factor bHLH130-like isoform X3 | ||||
Swissprot | Q66GR3 | 5e-64 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A1S4CTA8 | 1e-173 | A0A1S4CTA8_TOBAC; transcription factor bHLH130-like isoform X3 | ||||
TrEMBL | A0A1U7VU47 | 1e-173 | A0A1U7VU47_NICSY; transcription factor bHLH130-like isoform X2 | ||||
STRING | XP_009769857.1 | 1e-170 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 9e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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