PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504182.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 336aa    MW: 37989 Da    PI: 9.5511
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.91.5e-302074155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wtp LH+rFv+ v+qLGG++kAtPk+++ +m+++gLtl+h+kSHLQkYRl
  XP_016504182.1 20 KPRLKWTPLLHQRFVDSVTQLGGADKATPKSLKSVMNIHGLTLYHLKSHLQKYRL 74
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-281778IPR009057Homeodomain-like
SuperFamilySSF466891.13E-131976IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-212075IPR006447Myb domain, plants
PfamPF143793.0E-21135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGLQNVESED MRLVLSRDAK PRLKWTPLLH QRFVDSVTQL GGADKATPKS LKSVMNIHGL  60
TLYHLKSHLQ KYRLAKSQLA QSDHKNRQEN NLESAIAHNR PKEDENSRNY FGAALRQKQS  120
RDIRDAAQIQ MNDLQIARAL KVQMEVQRKL HEQIEVQRHL QLRIEAQGKY LQLVLMKAQE  180
TVARYASSDE LAKAELSQFV SMVNKCCPSS SMSAVTKIDG SISKDRDRRN SPSSSLSTLT  240
KIDDSITKEV GTLMKRNSSI LSLNPGDGSG SNAEAKISKK SRTNICNENW IEEPSGKIRD  300
TQRTNEQFVE TFDLNSQCIN DFDTGPEVID FIGRCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-182076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-182076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-182076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-182076157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-181976158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783076.10.0PREDICTED: uncharacterized protein LOC104231721
RefseqXP_016504182.10.0PREDICTED: uncharacterized protein LOC107822184
SwissprotF4I2747e-66PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1S4CSD30.0A0A1S4CSD3_TOBAC; uncharacterized protein LOC107822184
TrEMBLA0A1U7X0880.0A0A1U7X088_NICSY; uncharacterized protein LOC104231721
STRINGXP_009783076.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60361932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.29e-69G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]