PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016503766.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 933aa MW: 103308 Da PI: 5.2252

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016503766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.2	1.6e-28	541	592	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki ++ XP_016503766.1 541 AEKHVSLNVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGIPRWPSRKIGKV 592 5899*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.984	525	612	IPR003035	RWP-RK domain
Pfam	PF02042	6.8E-25	545	592	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.11E-20	827	916	No hit	No description
PROSITE profile	PS51745	20.908	832	914	IPR000270	PB1 domain
SMART	SM00666	6.4E-22	832	914	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.4E-22	833	913	No hit	No description
Pfam	PF00564	2.7E-17	833	913	IPR000270	PB1 domain
CDD	cd06407	4.31E-31	833	913	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MEGIVSFDGG TMSSHIDETF NNAIEMMNFE AYAGWCTSPC AIEQMFASYP SFSPINPMPI 60 NYAPFEQLNF EQQFPCEGEN WMFQQNNDDQ LRDSSEEADY VSDTDNCIIP KSPCQSLPER 120 MLKALELFKE SSGGGILAQV WIPMKNGDDH YILSTCEQPF LLDQVLSGYR EVSRKFTFDV 180 DMKPGSFPGL PGRVFTSRIP EWTSNVQYYR EAEYLRVRYA VDHEVRGSIA LPVLEDDGHD 240 TPCCAVLELV TTKEKSNFDL EMGHVCRALQ SVNLRSTTPP RFSSQSLSKN QRTALAEIKD 300 VLRAVCHAHR LPLALTWIPR ICTGGCITSS DEKSVLCVEN TACYVSDKEM HGFLHACMGH 360 DLEEGQGIVG KSLQSNHPFF YPDVKEYHIS EYPLVHHARK FGLNAAVAIR LRSIFTGDDD 420 YILEFFLPVD MKGSTEQQLL LNNLSRTMQR ICKSLRTISD VELVGQGGAK CGLQSESVLD 480 LTPIDLSRKI SQHSLLGSTL DLSKATLDVC DSEIAGMEAD GSREQTMSVS RRQKEKKRRA 540 AEKHVSLNVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG IPRWPSRKIG KVNRSLVNIQ 600 TVLKSVQGIE GGLKFDPATG GLVAASSILQ DFDSEKSMLF PCKEVSVKNP DSQDAVSVLQ 660 TSCIDNHDSV VKMEEDTHVD GNQLAESNSP FSGFCHGCKL AALDAGSPAS QDKMQCTNSR 720 NVSLGSFCTK EGCRSCRLST SNLKLDNSGC HFISRFPHSM PDADDVEKKT RASNEMDGDD 780 VVMEHNKGSS SGMTDLSNVS GSMMNGSSSS SHSFGERKHT KVKASSEDGG SLITIKATYK 840 EDRIRFKFEP SAGCFQLYEE VAKRFKLQTG EFQLEYLDDE EEWVMLVNEE DLHECLEILD 900 SLGTHSVKFL VQDVSCAIGS SGSSTSCFLT SGS

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MEGIVSFDGG TMSSHIDETF NNAIEMMNFE AYAGWCTSPC AIEQMFASYP SFSPINPMPI  60
NYAPFEQLNF EQQFPCEGEN WMFQQNNDDQ LRDSSEEADY VSDTDNCIIP KSPCQSLPER  120
MLKALELFKE SSGGGILAQV WIPMKNGDDH YILSTCEQPF LLDQVLSGYR EVSRKFTFDV  180
DMKPGSFPGL PGRVFTSRIP EWTSNVQYYR EAEYLRVRYA VDHEVRGSIA LPVLEDDGHD  240
TPCCAVLELV TTKEKSNFDL EMGHVCRALQ SVNLRSTTPP RFSSQSLSKN QRTALAEIKD  300
VLRAVCHAHR LPLALTWIPR ICTGGCITSS DEKSVLCVEN TACYVSDKEM HGFLHACMGH  360
DLEEGQGIVG KSLQSNHPFF YPDVKEYHIS EYPLVHHARK FGLNAAVAIR LRSIFTGDDD  420
YILEFFLPVD MKGSTEQQLL LNNLSRTMQR ICKSLRTISD VELVGQGGAK CGLQSESVLD  480
LTPIDLSRKI SQHSLLGSTL DLSKATLDVC DSEIAGMEAD GSREQTMSVS RRQKEKKRRA  540
AEKHVSLNVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG IPRWPSRKIG KVNRSLVNIQ  600
TVLKSVQGIE GGLKFDPATG GLVAASSILQ DFDSEKSMLF PCKEVSVKNP DSQDAVSVLQ  660
TSCIDNHDSV VKMEEDTHVD GNQLAESNSP FSGFCHGCKL AALDAGSPAS QDKMQCTNSR  720
NVSLGSFCTK EGCRSCRLST SNLKLDNSGC HFISRFPHSM PDADDVEKKT RASNEMDGDD  780
VVMEHNKGSS SGMTDLSNVS GSMMNGSSSS SHSFGERKHT KVKASSEDGG SLITIKATYK  840
EDRIRFKFEP SAGCFQLYEE VAKRFKLQTG EFQLEYLDDE EEWVMLVNEE DLHECLEILD  900
SLGTHSVKFL VQDVSCAIGS SGSSTSCFLT SGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016503766.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S4CRR4	0.0	A0A1S4CRR4_TOBAC; protein NLP9-like
STRING	XP_009601595.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]