PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016503329.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 375aa    MW: 42090.7 Da    PI: 7.8574
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016503329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-3161114255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rF++ave+LGG+++AtPk +l++m++kgL ++hvkSHLQ+YR+
  XP_016503329.1  61 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQMMNIKGLNIAHVKSHLQMYRS 114
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2957115IPR009057Homeodomain-like
PROSITE profilePS5129412.29757117IPR017930Myb domain
SuperFamilySSF466891.79E-1459115IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-2261116IPR006447Myb domain, plants
PfamPF002494.6E-962113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MMEDSGESGC NSKTSSNSGK NEDEEENNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM  60
PRLRWTPDLH LRFIHAVERL GGQDRATPKL VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ  120
SQGIAHHSLF MEGGDPNIYN LNQLPMFPTF HQRLNSTFRY ENASWNCHGN WTRGQSTLDR  180
SSRGFYTTLT ERIFGSNHGR EANEDLCKRN PSFISERSTL QTHEIKDEMG FFLERENHSG  240
ELTPILSHIA AKAQARAINL QKQTPLKRKV SDCDLDLNLS LGVKPRNESD NLCCTDSQKM  300
LPYSCPIFQR DTTFGGSNTQ SPSNNNDDND NGSILSLSLS SPLSSSKVTR FKEDGNSNAT  360
TENARRGAST LDLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1762116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754489e-50HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755219e-50HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621839.10.0PREDICTED: uncharacterized protein LOC104113394
RefseqXP_009621844.10.0PREDICTED: uncharacterized protein LOC104113394
RefseqXP_016503328.10.0PREDICTED: uncharacterized protein LOC107821409
RefseqXP_016503329.10.0PREDICTED: uncharacterized protein LOC107821409
TrEMBLA0A1S4CQR00.0A0A1S4CQR0_TOBAC; uncharacterized protein LOC107821409
STRINGXP_009621839.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-59G2-like family protein