PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016503328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 375aa MW: 42090.7 Da PI: 7.8574 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk +l++m++kgL ++hvkSHLQ+YR+ XP_016503328.1 61 PRLRWTPDLHLRFIHAVERLGGQDRATPKLVLQMMNIKGLNIAHVKSHLQMYRS 114 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 57 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.297 | 57 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-14 | 59 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-22 | 61 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.6E-9 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MMEDSGESGC NSKTSSNSGK NEDEEENNSS KFKDGGSSSN STVEESEKKP SVRPYVRSKM 60 PRLRWTPDLH LRFIHAVERL GGQDRATPKL VLQMMNIKGL NIAHVKSHLQ MYRSKKMDDQ 120 SQGIAHHSLF MEGGDPNIYN LNQLPMFPTF HQRLNSTFRY ENASWNCHGN WTRGQSTLDR 180 SSRGFYTTLT ERIFGSNHGR EANEDLCKRN PSFISERSTL QTHEIKDEMG FFLERENHSG 240 ELTPILSHIA AKAQARAINL QKQTPLKRKV SDCDLDLNLS LGVKPRNESD NLCCTDSQKM 300 LPYSCPIFQR DTTFGGSNTQ SPSNNNDDND NGSILSLSLS SPLSSSKVTR FKEDGNSNAT 360 TENARRGAST LDLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 9e-50 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 9e-50 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009621839.1 | 0.0 | PREDICTED: uncharacterized protein LOC104113394 | ||||
Refseq | XP_009621844.1 | 0.0 | PREDICTED: uncharacterized protein LOC104113394 | ||||
Refseq | XP_016503328.1 | 0.0 | PREDICTED: uncharacterized protein LOC107821409 | ||||
Refseq | XP_016503329.1 | 0.0 | PREDICTED: uncharacterized protein LOC107821409 | ||||
TrEMBL | A0A1S4CQR0 | 0.0 | A0A1S4CQR0_TOBAC; uncharacterized protein LOC107821409 | ||||
STRING | XP_009621839.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4382 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-59 | G2-like family protein |