PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016502485.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 331aa MW: 37412.5 Da PI: 5.1262

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016502485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.3	2e-23	33	126	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Lie+++ eer rg+ + +p+W +vs+++r++g +r+p+qC+++w+n+ +++kik++e++ + s+s + + ++l XP_016502485.1 33 RWTRQETLVLIEGKKIAEERTHRGRksssvfgsdKPEPKWNSVSSYCRQHGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSESYWIMSNDL 126 8************999999887555677777799****************************************9866666677766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.329	26	99	IPR017877	Myb-like domain
Pfam	PF13837	7.2E-13	32	122	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-6	32	100	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MNENTTSLAD LVDGQQKPTE DTDDKSKTPR HSRWTRQETL VLIEGKKIAE ERTHRGRKSS 60 SVFGSDKPEP KWNSVSSYCR QHGANRGPVQ CRKRWSNMIS DFRKIKAWES QTNGSSESYW 120 IMSNDLRRER KLPGFFDREV YDVLDGKEFT AEAYQLALVT ITTDDKVEYG IETAEEEEEE 180 DEQENTEAEA VSHTDGYIMA DDVLFPAMEE IGSNPLKEGI AKHKKAKSIP SPTPISGTAE 240 GEQPGSDFWK SSIFKDGVKR KRQSPDGCIA TSLGYKLLKT LEQNTNMLHA QLDAQIDNHQ 300 LDREQQKEHT DSLIAALNKV ADALARVADK M

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009773262.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Refseq	XP_016502485.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
TrEMBL	A0A1S4CN58	0.0	A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like
TrEMBL	A0A1U7VZR6	0.0	A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like
STRING	XP_009773262.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-77	Trihelix family protein