PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016502099.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YC | ||||||||
Protein Properties | Length: 263aa MW: 29048.9 Da PI: 6.6329 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.7 | 5.3e-56 | 73 | 177 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_016502099.1 73 QLQMFWTYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 167 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_016502099.1 168 VDIVPRDEIK 177 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.89E-34 | 55 | 167 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.5E-37 | 87 | 159 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.0E-20 | 95 | 158 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MRAVAYKFLG RVHHYTSVEI LKAIVAFISP KNAMDNNPHQ SPTTAAAAAA AAQSAPYPQQ 60 TPYHHLLQQQ QQQLQMFWTY QRQEIEQAND FKNHQLPLAR IKKIMKADED VRMISAEAPI 120 LFAKACELFI LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDES 180 GVVGLGPGMV GPTASGVPYY YPPLGQPTPP GGVMMGRPAP MAGVDPAAFY SQPPSQAWQW 240 QTTEDNSYAS GGSSGQGNLD GQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-54 | 81 | 173 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ767662 | 0.0 | KJ767662.1 Nicotiana tabacum CONSTANS interacting protein 2a (CIP2a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009780179.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_016502099.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 1e-102 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1S4CME4 | 0.0 | A0A1S4CME4_TOBAC; nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | A0A1U7WZX3 | 0.0 | A0A1U7WZX3_NICSY; nuclear transcription factor Y subunit C-1-like | ||||
STRING | XP_009780179.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4087 | 21 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 3e-97 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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