PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501681.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 471aa    MW: 51857.2 Da    PI: 7.5145
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501681.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-061049437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    r C+ ++++ + l+C+ ++  lC  C ++ H+       H
  XP_016501681.1 10 RPCDFCNQQIAVLYCRADSAKLCLFCDQHVHSAnalskkH 49
                    78***************************99544555555 PP
2zf-B_box18.44.4e-065293342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvpl 42
                     ++C+++ ++++++ C +++  lC++C    H +  H+++p+
  XP_016501681.1 52 SQICDNCCSEPVSIRCATDNLVLCQECDWDAHGScaHDRTPV 93
                    579**************************99*5599998875 PP
3CCT64.14.2e-22423466144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  XP_016501681.1 423 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAN 466
                     7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.442754IPR000315B-box-type zinc finger
SMARTSM003368.0E-11754IPR000315B-box-type zinc finger
CDDcd000211.91E-71042No hitNo description
PROSITE profilePS501199.2295093IPR000315B-box-type zinc finger
CDDcd000213.47E-65493No hitNo description
PROSITE profilePS5101714.912423465IPR010402CCT domain
PfamPF062031.8E-16423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSQRNTGDSR PCDFCNQQIA VLYCRADSAK LCLFCDQHVH SANALSKKHL RSQICDNCCS  60
EPVSIRCATD NLVLCQECDW DAHGSCAHDR TPVEGFSGCP CASELASAWG LDVEAKKPPT  120
PTHLQPTWNG FLEPCNWMCK DVIPPPSVLL QDLMVPNANN NSGIYSTTRE VGRKQNPTCG  180
KQKQVILKQL IELFKRDFAD GVGGGSEDLV PKTPNGSSDW QGNVNVTEGS DAVMGGANQQ  240
LEPQSVPFTS LLMMQKPHNS KDSDRMVQGN ILSSGNSYVQ NTQIWDFNLG QLRSHEQSSS  300
VEADYSESDM AYMMKSYGEL IKGTSLASSK GLELSGINRS VAHEDMTALS NNSNNRGGSQ  360
GPATSESNNL PIIKLSSDSG YTKRKCCGVS KDLNFMEQSI FVGGENTGEE ILKADMELLA  420
KNRGNAMQRY KEKKKTRRYD KHIRYESRKA RADTRKRVKG RFVKANEAPD G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755173e-75HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501680.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_016501681.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_016501682.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
RefseqXP_016501683.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1S4CKC30.0A0A1S4CKC3_TOBAC; zinc finger protein CONSTANS-LIKE 14-like
STRINGXP_009631919.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.12e-99B-box type zinc finger protein with CCT domain