PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501663.1
Common NamePHV
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 847aa    MW: 92920 Da    PI: 6.412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.71.9e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_016501663.1 19 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    6789*****************************************************97 PP
2START170.88.9e-541683752204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W  +++   +l vi +g  g+++l+
  XP_016501663.1 168 IAEETLAEFLGKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYSDCRCLNVLSVIPTGngGTIELI 261
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +++a+++l++ Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_016501663.1 262 YLQTYAPTTLASaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVLRPLY 356
                     ****************************************999998999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++kt+va+l++ +
  XP_016501663.1 357 ESSKILAQKTTVAALRHIR 375
                     ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4511478IPR001356Homeobox domain
SMARTSM003892.3E-151682IPR001356Homeobox domain
SuperFamilySSF466892.91E-161982IPR009057Homeodomain-like
PfamPF000466.2E-161977IPR001356Homeobox domain
CDDcd000861.40E-161979No hitNo description
Gene3DG3DSA:1.10.10.601.7E-182177IPR009057Homeodomain-like
CDDcd146861.24E-571110No hitNo description
PROSITE profilePS5084826.123158386IPR002913START domain
CDDcd088753.89E-70162378No hitNo description
Gene3DG3DSA:3.30.530.206.2E-23166372IPR023393START-like domain
SMARTSM002344.6E-52167377IPR002913START domain
PfamPF018521.8E-51168375IPR002913START domain
SuperFamilySSF559616.59E-38168379No hitNo description
PfamPF086701.7E-47702846IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MALCLHRESN KNQIMDNSKY VRYTPEQVEA LERVYAECPK PTSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLTTVNRK LSAMNKLLME ENDRLQKQVS QLVYENGYMK  120
QQINTQVSST TTDTSCESVV VNGQQQRKHP TPQHPERDAN NPAGLLAIAE ETLAEFLGKA  180
TGTAVDWVQM IGMKPGPDSI GIVAVSRNCS GVAARACGLV SLEPTKVAEI LKDRPSWYSD  240
CRCLNVLSVI PTGNGGTIEL IYLQTYAPTT LASARDFWTL RYTTSLEDGS LVICERSLTT  300
ATGGPTGPPA TSFVRAEMLP SGYLIRPCEG GGSMIHIVDH IDLDAWSVPE VLRPLYESSK  360
ILAQKTTVAA LRHIRQIAQE TSGEIQYTGG RQPAVLRALS QRLCRGFNDA VNGFVDDGWT  420
VMDSDGVEDV TIAINSSSTK FLGSQYNTLS ILPTFGGVLC ARASMLLQNV PPALLVRFLR  480
EHRSEWADYG VDAYSAASLK ASPYAVPCAR PGGFPSSQVI LPLAQTVEHE EFLEVVRLEG  540
PAFSPEDIAL SRDMYLLQLC SGVDENASGA CAQLVFAPID ESFGDDAPLL PSGFRVIPLE  600
PKSDGPAATR TLDLASTLEA GTGGTRPAGE IEASNYNHRS VLTIAFQFTF ESHYRDNVAA  660
MARQYVRSIV GSVQRVAMAI APSRLSSQLT PKPFPGSPEA VTLARWISRS YRVHTGGDLL  720
KVDSHAGDAV LKQLWHHSDA IMCCSVKMNA SAVFTFANQA GLDMLETTLL ALQDIMLDKI  780
LDEAGRKVLL SEFSKIMQQG FAHLPAGICV SSMGRPVSYE QAVAWKVLND EDSNHCLAFM  840
FINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612341.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
RefseqXP_016501663.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S4CKE40.0A0A1S4CKE4_TOBAC; homeobox-leucine zipper protein ATHB-14-like isoform X1
STRINGXP_009612341.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]