PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016501380.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 408aa MW: 45918 Da PI: 9.5037

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016501380.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.3e-32	220	273	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_016501380.1 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 273 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.7E-15	216	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	218	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.4E-24	220	273	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-7	221	272	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTNWKRST NNSTTEDEMD LMFWRRALES RNSNTSSLSK 60 SHANNNNNNA SLFELSLSNP KPTPEFKSGP FHHIQNTHTN FIHSLQQNHL LQQQNQGLNS 120 ELSFLRPIRG IPVYHQNPPP PPASHYPIFG QQTFDNTNTA ATLPIRSSGC CINNNNNKTM 180 SNSSSSRIPF QTSQQYHHQA GVMRSRFLSR FPAKRTMRAP RMRWTSSLHA RFVHAVELLG 240 GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDRV AVPASSGQSE VFDNGSSGDT 300 SEDLMPEIEN SRKSDLSEQQ GRNNNMHLQD KDYHGLWSNS SRESWQLHGK LGDYPGNMPS 360 LEKLQHKEME GKCLSYDGIS GEVSSSSITE TSPKKKPNLE FTLGRPSQ

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTNWKRST NNSTTEDEMD LMFWRRALES RNSNTSSLSK  60
SHANNNNNNA SLFELSLSNP KPTPEFKSGP FHHIQNTHTN FIHSLQQNHL LQQQNQGLNS  120
ELSFLRPIRG IPVYHQNPPP PPASHYPIFG QQTFDNTNTA ATLPIRSSGC CINNNNNKTM  180
SNSSSSRIPF QTSQQYHHQA GVMRSRFLSR FPAKRTMRAP RMRWTSSLHA RFVHAVELLG  240
GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDRV AVPASSGQSE VFDNGSSGDT  300
SEDLMPEIEN SRKSDLSEQQ GRNNNMHLQD KDYHGLWSNS SRESWQLHGK LGDYPGNMPS  360
LEKLQHKEME GKCLSYDGIS GEVSSSSITE TSPKKKPNLE FTLGRPSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	6e-51	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798333.1	0.0	PREDICTED: probable transcription factor KAN2
Refseq	XP_016501380.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	1e-87	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S4CJH5	0.0	A0A1S4CJH5_TOBAC; probable transcription factor KAN2
TrEMBL	A0A1U7Y5C2	0.0	A0A1U7Y5C2_NICSY; probable transcription factor KAN2
STRING	XP_009798333.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-68	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]