PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501349.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 22405.3 Da    PI: 8.2128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.4e-172574154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    ++y+GVr ++ +gr++AeIrdp     + +r++lg+f+tae+ a+a++  + +l+
  XP_016501349.1 25 PRYRGVRKRP-WGRFAAEIRDPI----KkTRVWLGTFDTAEDVARAYDDSACALR 74
                    68********.**********72....35********************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.27E-322585No hitNo description
PfamPF008471.3E-102573IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-192684IPR016177DNA-binding domain
PROSITE profilePS5103221.8652683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-302684IPR001471AP2/ERF domain
SMARTSM003801.2E-322689IPR001471AP2/ERF domain
PRINTSPR003679.7E-112738IPR001471AP2/ERF domain
PRINTSPR003679.7E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MRHRKSSEVN RLGSDILKRP ETDPPRYRGV RKRPWGRFAA EIRDPIKKTR VWLGTFDTAE  60
DVARAYDDSA CALRVPKAKT NFPNLAAITT QQDNNPYGLN QFELFPNSRP ASSSMGSMLE  120
SSSGPRGSGN KLIRIKISRP VLPPEDCRSD CDSSSSVVDH RCDIDQTSLF LPKQPLPFDL  180
NLPPPSDDVD ADDLHVTALC L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-202783663ATERF1
3gcc_A8e-202783663ATERF1
5wx9_A8e-2022841073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501349.11e-146PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotQ9SXS85e-31ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A1S4CKA71e-145A0A1S4CKA7_TOBAC; ethylene-responsive transcription factor 3-like
STRINGXP_009630856.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137791113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-29ethylene response factor 7