PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501275.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 289aa    MW: 31890.4 Da    PI: 6.9724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023197219123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_016501275.1 197 HECSICGAEFTSGQALGGHMRRH 219
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-10114139IPR007087Zinc finger, C2H2
SuperFamilySSF576675.46E-9114137No hitNo description
PROSITE profilePS5015710.554115142IPR007087Zinc finger, C2H2
SMARTSM003550.23115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576675.46E-9192219No hitNo description
PfamPF139129.6E-13196220IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723197219IPR007087Zinc finger, C2H2
SMARTSM003550.01197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MILENKEYSM EFVQMQENVD HHMNMVIKRR RTKRPRPPSP LALTIATSSC STVEGAGGDG  60
GGELDGHVAN SSSLSNCGID QFAKNSEEEE DMANCLILLA QGHNQKSQSS SLDVFQCKTC  120
NRCFSSFQAL GGHRASHKKP KSTTQEEIKN SKPIEQVATC LKLNEDHVTT LSLQIPSNNN  180
NNNNNNNSNN KNKTRVHECS ICGAEFTSGQ ALGGHMRRHR PLPNSITIAA SSTSNEESHD  240
QTKSTRNFLS LDLNLPAPED DHREMTKFSF ASKEQVIVFS ASPLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13236KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613142.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_016501275.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S4CJ850.0A0A1S4CJ85_TOBAC; zinc finger protein ZAT5-like
STRINGXP_009613142.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-52C2H2 family protein