PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016501170.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 33395.8 Da PI: 6.68

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016501170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1.1e-17	71	125	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_016501170.1 71 KKIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 125 55568999**********************************************9 PP
2	HD-ZIP_I/II	126.3	1.3e-40	72	163	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L +++++L++e+++ XP_016501170.1 72 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAVKAENDSLLAHNQKLHAEIMT 163 669************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-19	62	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	67	127	IPR001356	Homeobox domain
CDD	cd00086	2.06E-15	70	128	No hit	No description
SMART	SM00389	3.1E-17	70	131	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-15	71	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-19	75	134	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.5E-16	127	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTCTNEMAFF PANFMLHTPH QDDHQDFQGV GSFLGKRTMS FNGMEANNNC EENHEEEDLS 60 DDGLREAGRK KKIRRLNMEQ VKTLEKNFEL GNKLEPERKM QLARALGLQP RQIAIWFQNR 120 RARWKTKQLE KDYDVLKRQF EAVKAENDSL LAHNQKLHAE IMTLKNVEQP TEISINLNKE 180 TEGSSSNRSE NSSEIMKLDT SMRPAAIDSP ILVSTTHQPI TRCSRLLFPS PMRPNGVAQL 240 FHSSRQEVLH CNMKLMDQTV KEETLSNMLS AIDDQSPGFW PWLEQPHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	75	GRKKKIRRL
2	119	127	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016501170.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	3e-97	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A1S4CIZ0	0.0	A0A1S4CIZ0_TOBAC; homeobox-leucine zipper protein ATHB-13-like
STRING	XP_009794845.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-91	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]