PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016501075.1
Common NameNtMADS4
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27983.9 Da    PI: 9.7207
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016501075.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  XP_016501075.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                    79***********************************************96 PP
2K-box99.16.2e-33811747100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + ++++++s ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL +Le+qLe+slk+iRs+K++ +l+q+ +lq+ke+++ e+nk+L++klee
  XP_016501075.1  81 MQSASNHTQSNYHEYLRLKARVELLQRSQRNLLGEDLGTLNSKELDHLEHQLESSLKQIRSRKTQNMLDQLADLQQKEQMMAEANKQLKRKLEE 174
                     5578899************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-34280IPR002100Transcription factor, MADS-box
CDDcd002659.64E-46279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2683172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.58788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST  60
SSMMQTLEKY QQCSYASLDP MQSASNHTQS NYHEYLRLKA RVELLQRSQR NLLGEDLGTL  120
NSKELDHLEH QLESSLKQIR SRKTQNMLDQ LADLQQKEQM MAEANKQLKR KLEESAARIP  180
IRLSWDNGGQ TMQHNRQLPP QTEGFFQPLG LNSSPQFGYS PMGGNEVNAA ATANNMNGFI  240
PGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-269017219101Developmental protein SEPALLATA 3
4ox0_B2e-269017219101Developmental protein SEPALLATA 3
4ox0_C2e-269017219101Developmental protein SEPALLATA 3
4ox0_D2e-269017219101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0687230.0AF068723.1 Nicotiana tabacum MADS-box protein MADS4 (NtMADS4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501075.10.0PREDICTED: MADS-box protein CMB1-like
SwissprotK4DEK01e-141J2_SOLLC; MADS-box protein J2
TrEMBLA0A1S4CIP70.0A0A1S4CIP7_TOBAC; MADS-box protein CMB1-like
STRINGXP_009598871.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.15e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]