PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016501064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21259.7 Da PI: 4.8302 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 26 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++k++g+Wv+eIr+p r r++lg+f tae+Aa a++ a+ +l+g XP_016501064.1 26 PVYRGIRRRKSSGKWVSEIREP-----RspNRIWLGTFPTAEMAAVAYDVAAIALKG 77 68*******************9.....4489**********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-11 | 26 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 27 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.55 | 27 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 27 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 27 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.51E-28 | 28 | 87 | No hit | No description |
PRINTS | PR00367 | 2.0E-5 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-5 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MATYGGSNTN IGGSATTPDN YSGRHPVYRG IRRRKSSGKW VSEIREPRSP NRIWLGTFPT 60 AEMAAVAYDV AAIALKGRDT DLNFPNSAAS LPVPATSSPR DIQAAAASAA AAVGAAGDAL 120 LARREVHDQK SKLISENLGF ENNYEFMDED LIFDMPNVLV NMAEGMLLSP PRFNLPDEDF 180 AAAAEYTAYQ NLWNYP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 4e-32 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 4e-32 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016501064.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 2e-56 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1S4CJH0 | 1e-141 | A0A1S4CJH0_TOBAC; ethylene-responsive transcription factor ERF024-like | ||||
STRING | XP_009793202.1 | 1e-141 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA553 | 22 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 5e-46 | ERF family protein |