PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016501061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 28127.4 Da PI: 6.8813 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 107 | 151 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++G+g+W+ I+++m Rt+ q+ s+ qky XP_016501061.1 107 PWTEEEHRRFLMGLDKYGKGDWRNISKKMVISRTPTQVASHAQKY 151 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.07E-11 | 10 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 6.73 | 13 | 68 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-8 | 14 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.73E-7 | 18 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 98 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.106 | 100 | 156 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.01E-16 | 101 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-18 | 103 | 155 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.7E-12 | 104 | 154 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 107 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.87E-10 | 107 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
METIFPTSSS WMNKSSIWTK EENKLFESAI AIYDENTPNR WFQVADMIPG KSVLDVMMQY 60 QELAADVCDI EAGLVPNPGY FASSDCGLQT FRKRGRSSDQ ERKKGVPWTE EEHRRFLMGL 120 DKYGKGDWRN ISKKMVISRT PTQVASHAQK YYQRQLSGCK DKRRPSIHDI TTFHFVADDT 180 SQNNINSLSK EKLHKFTTTT DVVKYWNSSS DEHLMDFGSS YGSSIVAYPY ELSSQSWDGH 240 GAIWD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 103 | RKRGRSSDQERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766549.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Refseq | XP_016501061.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1S4CJ87 | 0.0 | A0A1S4CJ87_TOBAC; transcription factor DIVARICATA-like | ||||
TrEMBL | A0A1U7VVW5 | 0.0 | A0A1U7VVW5_NICSY; transcription factor DIVARICATA-like | ||||
STRING | XP_009766549.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11280.2 | 1e-81 | MYB family protein |
Publications ? help Back to Top | |||
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