PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500618.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28292.2 Da    PI: 9.6554
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-311363151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_016500618.1 13 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 63
                    79***********************************************96 PP
2K-box100.62.1e-33851778100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     s++++++++ ++e+ +Lk+++e Lqr+qR+llGedL++Ls k+L+qLe+qLe slk+iRs+K++++l+q+ +lq++e++l e nk Lr+klee
  XP_016500618.1  85 SQSATDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGTLSTKDLEQLENQLEASLKQIRSRKTHFMLDQLADLQQREQMLAESNKHLRRKLEE 177
                     4688999***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-35464IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.987565IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-29727IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-32786IPR002100Transcription factor, MADS-box
CDDcd002651.51E-391282No hitNo description
PfamPF003192.3E-261461IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-292742IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-294263IPR002100Transcription factor, MADS-box
PfamPF014861.2E-2887175IPR002487Transcription factor, K-box
PROSITE profilePS5129716.0791181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
ANYKDRKKEK RLKRIENKIN RQVTFAKRRN GLLKKAYELS VLCDAEVALI IFSNRGKLYE  60
FCSTSSMMKT IEKYQRCSYA TLEASQSATD TQNNYHEYLR LKARVELLQR SQRNLLGEDL  120
GTLSTKDLEQ LENQLEASLK QIRSRKTHFM LDQLADLQQR EQMLAESNKH LRRKLEESAA  180
GIPLRLCWED GAQAMQLNRL PQTEGFFQPL GLTSSPQFGY NHVGTDEVNG GASAHNMNGF  240
IPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A6e-289617522101Developmental protein SEPALLATA 3
4ox0_B6e-289617522101Developmental protein SEPALLATA 3
4ox0_C6e-289617522101Developmental protein SEPALLATA 3
4ox0_D6e-289617522101Developmental protein SEPALLATA 3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411DRKKEKRL
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352410.0AF335241.1 Petunia x hybrida MADS-box transcription factor FBP23 (FBP23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500618.10.0PREDICTED: MADS-box protein CMB1-like, partial
SwissprotQ7Y0401e-151EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A1S4CHH00.0A0A1S4CHH0_TOBAC; MADS-box protein CMB1-like
STRINGXP_009788128.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.28e-92MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]