PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500569.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LSD
Protein Properties Length: 124aa    MW: 13435.1 Da    PI: 8.172
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.77.8e-13730124
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdt 24
                    C+gCrt+L YPrGA++V+Ca+C++
  XP_016500569.1  7 CSGCRTILLYPRGASNVCCAVCNA 30
                    **********************98 PP
2zf-LSD146.46.3e-154670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+ PrGA+sVRC++C+tV
  XP_016500569.1 46 CGGCRTLLMHPRGASSVRCSCCHTV 70
                    ************************9 PP
3zf-LSD140.93.4e-1384107124
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                     Cg+Cr +L+YP GApsV+Ca+C+ 
  XP_016500569.1  84 CGNCRMMLMYPCGAPSVKCAICHY 107
                     **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.5E-12434IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-11730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-174373IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.3E-1281110IPR005735Zinc finger, LSD1-type
PfamPF069438.0E-1384108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MQSQLMCSGC RTILLYPRGA SNVCCAVCNA LTSVPPPGME MAQLICGGCR TLLMHPRGAS  60
SVRCSCCHTV NLVPGPNQFA HVHCGNCRMM LMYPCGAPSV KCAICHYITN VNVSMMFLFL  120
SDLW
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0364911e-140KT036491.1 Solanum tuberosum cultivar Kexin-4 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627143.15e-86PREDICTED: protein LOL1-like
RefseqXP_009627144.15e-86PREDICTED: protein LOL1-like
RefseqXP_016500568.15e-86PREDICTED: protein LOL1-like
RefseqXP_016500569.15e-86PREDICTED: protein LOL1-like
RefseqXP_018633619.15e-86PREDICTED: protein LOL1-like
SwissprotQ93ZB14e-52LOL1_ARATH; Protein LOL1
TrEMBLA0A1S4CHT21e-84A0A1S4CHT2_TOBAC; protein LOL1-like
STRINGXP_009627143.12e-85(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.15e-55lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]