PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016500337.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CAMTA

Protein Properties

Length: 926aa MW: 104595 Da PI: 7.8042

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016500337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.1	1.2e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e++ptf r XP_016500337.1 30 EEaKMRWLRPNEIHAILCNYKYFNIFVKPVNLPTSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDHPTFVR 124 45599**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_016500337.1 125 RCYWLLDKSLEHIVLVHYRETQ 146 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.772	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.8E-75	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.5E-46	31	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.7E-4	370	467	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.48E-12	378	464	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	6.3E-15	563	677	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.55E-15	563	679	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.93E-12	579	673	No hit	No description
PROSITE profile	PS50297	14.132	581	685	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.9E-5	614	643	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.579	614	646	IPR002110	Ankyrin repeat
Pfam	PF00023	1.2E-4	614	645	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	2.42E-6	724	827	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.181	761	787	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	16	776	798	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.346	777	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.21	779	797	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	799	821	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.889	800	824	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	1.2E-4	801	821	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	15	878	900	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.389	880	908	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 926 aa Download sequence Send to blast
MESSRAGQLA GSDIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNYK YFNIFVKPVN 60 LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDHP 120 TFVRRCYWLL DKSLEHIVLV HYRETQETQG SPVTSVAKGS PATPVNSNSS SDPSDPSGWV 180 LSEECNSVDE RAYGSSQHAH LEPNRDMTAK NHEQRLLEIN TLEWDELLAP ENPNKLNATQ 240 EAGGRASAGQ QNQFEVNGYS LNDGSLSVSR VPVASLESFV CQVAGSDTVN FNPSNDTSFR 300 SGDGQMTSNF QKNESGVTTV GAGDSFDSLN KDGLQTQDSF GRWINYFISD SPGSADEMMT 360 PESSVTIDQS YVMQQIFNIT EISPTWALSS EETKILVIGH FPGGQSQLAK SNLFCVCADV 420 CFPAEFVQSG VYRCVISPQP PGLVNLYLSF DGNTPISQVM TYEFRAPSAR KWTAPLEEQS 480 SWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QDSLKEAKRF VRKCSHITDN WAYLIKSIED 540 RKLPVPHAKD CLFELSLQTK FHEWLLERVI GGCKTSEWDE QGQGVIHLCA ILGYTWAVYP 600 FSWSGLSLDY RDKYGWTALH WAAHYGREKM VATLLSASAK PNLVTDPTSE NPGGSTAADL 660 ASKNGFEGLG AYLAEKALVA HFKDMTLAGN VSGSLQTTTE HINSGNFTEE ELYLKDTLAA 720 YRTAADAAAR IQAAFREHSF KVQTKAVESS NPEIEARNIV AAMKIQHAFR NYESRKKLAA 780 AARIQYRFRS WKMRKDFLNM RRHAIKIQAV FRGFQVRKQY RKIVWSVGVL EKAVLRWRLK 840 RKGFRGLQVQ SSQAVDIKPD GDVEEDFFRA SRKQAEERVE RSVVRVQAMF RSKRAQEEYR 900 RMKLEHDNAT LEYERASVLN PDIQIG

Sequence ? help Back to Top

Protein Sequence Length: 926 aa Download sequence Send to blast

MESSRAGQLA GSDIHGFRTL QDLDIPSIME EAKMRWLRPN EIHAILCNYK YFNIFVKPVN  60
LPTSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDHP  120
TFVRRCYWLL DKSLEHIVLV HYRETQETQG SPVTSVAKGS PATPVNSNSS SDPSDPSGWV  180
LSEECNSVDE RAYGSSQHAH LEPNRDMTAK NHEQRLLEIN TLEWDELLAP ENPNKLNATQ  240
EAGGRASAGQ QNQFEVNGYS LNDGSLSVSR VPVASLESFV CQVAGSDTVN FNPSNDTSFR  300
SGDGQMTSNF QKNESGVTTV GAGDSFDSLN KDGLQTQDSF GRWINYFISD SPGSADEMMT  360
PESSVTIDQS YVMQQIFNIT EISPTWALSS EETKILVIGH FPGGQSQLAK SNLFCVCADV  420
CFPAEFVQSG VYRCVISPQP PGLVNLYLSF DGNTPISQVM TYEFRAPSAR KWTAPLEEQS  480
SWDEFRVQMR LAHLLFSTSK SLSIFSSKVH QDSLKEAKRF VRKCSHITDN WAYLIKSIED  540
RKLPVPHAKD CLFELSLQTK FHEWLLERVI GGCKTSEWDE QGQGVIHLCA ILGYTWAVYP  600
FSWSGLSLDY RDKYGWTALH WAAHYGREKM VATLLSASAK PNLVTDPTSE NPGGSTAADL  660
ASKNGFEGLG AYLAEKALVA HFKDMTLAGN VSGSLQTTTE HINSGNFTEE ELYLKDTLAA  720
YRTAADAAAR IQAAFREHSF KVQTKAVESS NPEIEARNIV AAMKIQHAFR NYESRKKLAA  780
AARIQYRFRS WKMRKDFLNM RRHAIKIQAV FRGFQVRKQY RKIVWSVGVL EKAVLRWRLK  840
RKGFRGLQVQ SSQAVDIKPD GDVEEDFFRA SRKQAEERVE RSVVRVQAMF RSKRAQEEYR  900
RMKLEHDNAT LEYERASVLN PDIQIG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN566049	0.0	JN566049.1 Solanum lycopersicum calmodulin-binding transcription factor SR3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016500337.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1S4CGM8	0.0	A0A1S4CGM8_TOBAC; calmodulin-binding transcription activator 5-like
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]