PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016500182.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 22670.1 Da PI: 8.2043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.3 | 1.4e-16 | 117 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrdp + k r++lg+f+ +Aa+a++ a+ k++g XP_016500182.1 117 NYRGVRKRP-WGKFAAEIRDP---NkKGSRIWLGTFDADVDAARAYDCAAFKMRG 167 59*******.**********9...4345**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.89E-31 | 116 | 175 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 117 | 177 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.881 | 117 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 117 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-36 | 117 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-31 | 117 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-13 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-13 | 157 | 177 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTTQEEGLTL ELIRQHLLED FTSTESFINS LNSCFSDQIS PIFTSVKTEP STSNNSLSDS 60 PTSYPNSPIS HYFSDFPEFK TNSDTNLSPT SNSSVSSNST ISSDTTSSNI NENKNKNYRG 120 VRKRPWGKFA AEIRDPNKKG SRIWLGTFDA DVDAARAYDC AAFKMRGRKA ILNFPMDAGK 180 SGAPANIGRK RRRDNGMELE MLNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 114 | 176 | 2 | 64 | ATERF1 |
3gcc_A | 3e-28 | 114 | 176 | 2 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 192 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ874423 | 0.0 | KJ874423.1 Nicotiana tabacum ethylene response factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312955.1 | 1e-149 | ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 1e-50 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A1S4CG72 | 1e-148 | A0A1S4CG72_TOBAC; ethylene-responsive transcription factor ERF106-like | ||||
STRING | XP_009597659.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 6e-48 | ERF family protein |
Publications ? help Back to Top | |||
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