PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016500154.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 525aa    MW: 57694 Da    PI: 8.4373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016500154.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.88.9e-0693115123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F+r  nL+ H r H
  XP_016500154.1  93 FFCEICNKGFKRDQNLQLHRRGH 115
                     67*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.71E-792115No hitNo description
Gene3DG3DSA:3.30.160.602.5E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74193115IPR007087Zinc finger, C2H2
PfamPF121718.8E-693115IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02193115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM0035599135165IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4158191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.71E-7165190No hitNo description
SMARTSM00355160170190IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MMKGLMNNIQ QTQQHVHIVE ENMSNLTSAS GDQASISASS NMNDTTTGSF FISQNQNPQQ  60
QQIKKKRNQA GNPDPEAEVI ALSPKTLLAT NRFFCEICNK GFKRDQNLQL HRRGHNLPWK  120
LKQRTNKEVI KKKVYVCPEP SCVHHDSTRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA  180
VQSDCKAHSK TCGTREYRCE CGTLFSRRDS FITHRAFCDT LAVESARSAI TGGNPIISFS  240
SQAAGSTSTS HMNQLQFQTP QYVNNSHEFT AAAAFSMKKE QPNYDFNHLR HNTEIPQWLM  300
SCQPFVGAGP GPPSSVPADF SSSVFQATRL NQEYTQSHQD LTSTDFHENP NPNFGAVSPH  360
ISATALLQKA AELSATMSNK ANSVSASSPA HNTDPAAILL RQLPHQTHVS VTTDSAAAVG  420
NSYGNKAAAA TVPSFSFTNA TGFEGSTFED AFGGFGSLNS KKDNDFNGTT LSETTSGIND  480
DIMTKDFLGL RPLSHNDIFN IAGLVNTTTS SSEHDQFQNH KTWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-31166227364Zinc finger protein JACKDAW
5b3h_F3e-31166227364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500154.10.0PREDICTED: protein indeterminate-domain 7-like isoform X2
TrEMBLA0A1S4CGQ60.0A0A1S4CGQ6_TOBAC; protein indeterminate-domain 7-like isoform X2
STRINGXP_009603433.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-115indeterminate(ID)-domain 7