PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016500111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 429aa MW: 48231.9 Da PI: 9.3447 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 53 | 75 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_016500111.1 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.1e-05 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_016500111.1 130 WVCEKCSKGYAVQSDYKAHLKTC 152 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 52 | 75 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.88E-5 | 52 | 75 | No hit | No description |
PROSITE profile | PS50157 | 10.97 | 53 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 53 | 75 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 75 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 55 | 135 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00355 | 190 | 94 | 124 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.4E-4 | 121 | 151 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.88E-5 | 125 | 150 | No hit | No description |
SMART | SM00355 | 60 | 130 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MLSNNPSSSS DPFTSSENGN NANRRKRRPA GTPDPDAEVV SLSPKTLLES DRYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LLKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF 120 RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACSM 180 GRLRSESQSL HPSNCLSRTA SSPSPSSDTN LSTTPWPTTL LKNLSSSTTA THHVNPNIIK 240 NSTKQRHNLE LQLLTTTTSS SSPFDVSVSS KPNEDHSTYN LQLSIGSSDF SERNESSENA 300 TLDALKLKDE AREQLRLAMA EKAYAEEARQ QAKRQIELAE QEFASAKRIR QQAQAELNKA 360 NALKQQAIKQ INSTLSQITC HSCKQKFQAS LSDENNSMTL SYISSALTEG QHEVAKNINH 420 TNHLKFSQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-18 | 126 | 178 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 5e-18 | 126 | 178 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016500111.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Refseq | XP_016500112.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2 | ||||
Swissprot | F4IPE3 | 1e-152 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A1S4CG04 | 0.0 | A0A1S4CG04_TOBAC; protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
STRING | XP_009618827.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-139 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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