PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499996.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 467aa MW: 50521.9 Da PI: 4.1959

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499996.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.9	1.4e-12	378	402	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016499996.1 378 CGSCRQLLTYPQGAKLVKCSCCQTV 402 ************************9 PP
2	zf-LSD1	44.1	3.4e-14	416	440	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016499996.1 416 CGGCAVLLMYPYGAPSVRCSSCRHM 440 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.0E-16	375	405	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	378	402	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.2E-10	413	441	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	416	439	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence Send to blast
MEENLNNIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD 60 VGMGSKEHES EDDEDGPPPG WNTVIPQKDL PSTLPPAAVT CDVEMEKKEE VVEDENNSPP 120 PGWELIPPLQ PLQTSTPPSG TQQALLADIE MEQKEVNEDD GPPPGWELAP QLQPLQTSTP 180 PSGMQQALLA DTEMEQKEEV DEDNGPPPGW ELTPQSQPLQ TSTPPSGTQQ ALLAEMEKKE 240 EVVKDEDNGP PPGLQLISQS QPLQTSTPPS GTQQTLLADV EMGSKQHSAV EKEGHPLGSE 300 SIPMTGHSSP PTPPPQSSSS VASSEMEMGS KQEGTKNEEV RPPIEKQPTS HLPRIKPTAP 360 QSSSHATTFS AEMGQMVCGS CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE VGQVKCGGCA 420 VLLMYPYGAP SVRCSSCRHM TKIGAHNRRP PLSVQQARRR HPAYQVH

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence Send to blast

MEENLNNIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD  60
VGMGSKEHES EDDEDGPPPG WNTVIPQKDL PSTLPPAAVT CDVEMEKKEE VVEDENNSPP  120
PGWELIPPLQ PLQTSTPPSG TQQALLADIE MEQKEVNEDD GPPPGWELAP QLQPLQTSTP  180
PSGMQQALLA DTEMEQKEEV DEDNGPPPGW ELTPQSQPLQ TSTPPSGTQQ ALLAEMEKKE  240
EVVKDEDNGP PPGLQLISQS QPLQTSTPPS GTQQTLLADV EMGSKQHSAV EKEGHPLGSE  300
SIPMTGHSSP PTPPPQSSSS VASSEMEMGS KQEGTKNEEV RPPIEKQPTS HLPRIKPTAP  360
QSSSHATTFS AEMGQMVCGS CRQLLTYPQG AKLVKCSCCQ TVNFVLEAHE VGQVKCGGCA  420
VLLMYPYGAP SVRCSSCRHM TKIGAHNRRP PLSVQQARRR HPAYQVH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499995.1	0.0	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2 isoform X2
Refseq	XP_016499996.1	0.0	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2 isoform X3
TrEMBL	A0A1S4CFV3	0.0	A0A1S4CFV3_TOBAC; pollen-specific leucine-rich repeat extensin-like protein 2 isoform X2
STRING	XP_009605279.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-35	lsd one like 2