PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499994.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 492aa MW: 53173.6 Da PI: 4.1195

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	403	427	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_016499994.1 403 CGSCRQLLTYPQGAKLVKCSCCQTV 427 ************************9 PP
2	zf-LSD1	44	3.6e-14	441	465	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_016499994.1 441 CGGCAVLLMYPYGAPSVRCSSCRHM 465 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.6E-16	400	430	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-10	403	427	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.8E-10	438	466	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	441	464	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MEENLNNIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGFDSLALP SQHTTNDETD 60 EDEGPPPGWP SNPQQQNQQL LLTTDVGMGS KEHESEDDED GPPPGWNTVI PQKDLPSTLP 120 PAAVTCDVEM EKKEEVVEDE NNSPPPGWEL IPPLQPLQTS TPPSGTQQAL LADIEMEQKE 180 VNEDDGPPPG WELAPQLQPL QTSTPPSGMQ QALLADTEME QKEEVDEDNG PPPGWELTPQ 240 SQPLQTSTPP SGTQQALLAE MEKKEEVVKD EDNGPPPGLQ LISQSQPLQT STPPSGTQQT 300 LLADVEMGSK QHSAVEKEGH PLGSESIPMT GHSSPPTPPP QSSSSVASSE MEMGSKQEGT 360 KNEEVRPPIE KQPTSHLPRI KPTAPQSSSH ATTFSAEMGQ MVCGSCRQLL TYPQGAKLVK 420 CSCCQTVNFV LEAHEVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA HNRRPPLSVQ 480 QARRRHPAYQ VH

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MEENLNNIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGFDSLALP SQHTTNDETD  60
EDEGPPPGWP SNPQQQNQQL LLTTDVGMGS KEHESEDDED GPPPGWNTVI PQKDLPSTLP  120
PAAVTCDVEM EKKEEVVEDE NNSPPPGWEL IPPLQPLQTS TPPSGTQQAL LADIEMEQKE  180
VNEDDGPPPG WELAPQLQPL QTSTPPSGMQ QALLADTEME QKEEVDEDNG PPPGWELTPQ  240
SQPLQTSTPP SGTQQALLAE MEKKEEVVKD EDNGPPPGLQ LISQSQPLQT STPPSGTQQT  300
LLADVEMGSK QHSAVEKEGH PLGSESIPMT GHSSPPTPPP QSSSSVASSE MEMGSKQEGT  360
KNEEVRPPIE KQPTSHLPRI KPTAPQSSSH ATTFSAEMGQ MVCGSCRQLL TYPQGAKLVK  420
CSCCQTVNFV LEAHEVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA HNRRPPLSVQ  480
QARRRHPAYQ VH

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016499994.1	0.0	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2 isoform X1
TrEMBL	A0A1S4CG98	0.0	A0A1S4CG98_TOBAC; pollen-specific leucine-rich repeat extensin-like protein 2 isoform X1
STRING	XP_009605279.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-35	lsd one like 2