PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 382aa MW: 42360.6 Da PI: 4.4724 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g XP_016499931.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 165 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-22 | 116 | 175 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-36 | 116 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.105 | 116 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-32 | 116 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-32 | 116 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-12 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MCGGAIISDD IAPSRTSRRL TAELLWGRSD LSKKQKNLNN YHSKPLRSQV VDLDDDFEAD 60 FQDFKDFSDD EDVEVDVKPF AFSASKNSTV EGSKTVKTVD SDKDADRSSK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDVEA RRIRGNKAKV NFPDEAPVPA 180 SRRTVKVNPQ KVLPKESLDS TIINNMEDGC YDSLGFLEEK PMTKQYGYED GRSVSGDTGF 240 GSFAPSAGTD IYFNSDVASN SFDCSDFGWG EPCARTPEIS SVLSAAIESN ESQLVEDDAS 300 PMKNLKSSPI NPVANDGNTA NKLSEELSAF ESQMKFLQIP YLEGNWDASV DTFLNSSATQ 360 DGENAMDLWS FDDVPSLMGG DF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 116 | 173 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY286010 | 0.0 | AY286010.1 Nicotiana tabacum callus-expressing factor (CEF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499931.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_016499932.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A1S4CFH5 | 0.0 | A0A1S4CFH5_TOBAC; ethylene-responsive transcription factor RAP2-12-like | ||||
STRING | XP_009627746.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-57 | related to AP2 12 |