PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499877.1 | ||||||||
Common Name | Ls | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 410aa MW: 46525.6 Da PI: 7.1892 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 431.2 | 7.8e-132 | 33 | 410 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl....fsevsPi 90 ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r s+ + l+p+++s+ s + a l+ +++v+P+ XP_016499877.1 33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLVHQFTRALSIRLNRYISSATNFLTPNASSNVVesS-NDSALLQSsylsLNQVTPF 126 89****************************************************999999999888877544432.222222223556******* PP GRAS 91 lkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..v 182 ++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R +pp+lRiTg g+ + ++l++tg+rLakfA++lg++f+f++l + XP_016499877.1 127 IRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLliT 216 ****************998799***********************9.999**********....***************************9643 PP GRAS 183 akrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 ++ +d ++ +++ + p+E+la+n+v+ lhrll+++ l+ +L+ +ks++Pkvv+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+ XP_016499877.1 217 NNNDNDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREMLRI----FLHRIKSMNPKVVTLAEREANHNHPLFLQRFVEALDYYAAVFDSLEAT 307 3355555551115556777****************99999999....************************************************ PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrp 366 lp+ s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++ + s+s++lgW+++p XP_016499877.1 308 LPPSSRERMTVEQVWFGREIIDIVAAEGDKRRERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQP 402 ****************************************************************************98855779*********** PP GRAS 367 LvsvSaWr 374 L+s+S+Wr XP_016499877.1 403 LFSISSWR 410 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.132 | 6 | 387 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.7E-129 | 33 | 410 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010223 | Biological Process | secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MLGSFGSSSQ SHDEEADDQR RRCSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST 60 NSSPFGDSTE RLVHQFTRAL SIRLNRYISS ATNFLTPNAS SNVVESSNDS ALLQSSYLSL 120 NQVTPFIRFS QLTANQAILE AINDNQQAIH IVDFDINHGV QWPPLMQALA DRYPPPTLRI 180 TGTGNDLDTL RRTGDRLAKF AHSLGLRFQF HPLLITNNND NDHDPSIISS IVLLPDETLA 240 INCVFYLHRL LKDREMLRIF LHRIKSMNPK VVTLAEREAN HNHPLFLQRF VEALDYYAAV 300 FDSLEATLPP SSRERMTVEQ VWFGREIIDI VAAEGDKRRE RHERFRSWEV MLRSCGFSNV 360 ALSPFALSQA KLLLRLHYPS EGYQLSVSST SNSFFLGWQN QPLFSISSWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-62 | 39 | 409 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-62 | 39 | 409 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-62 | 39 | 409 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU935581 | 0.0 | EU935581.1 Nicotiana tabacum lateral suppressor protein (Ls) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618056.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Refseq | XP_016499877.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Swissprot | Q9ZWC5 | 1e-131 | SCL18_ARATH; Scarecrow-like protein 18 | ||||
TrEMBL | A0A1S4CFB9 | 0.0 | A0A1S4CFB9_TOBAC; scarecrow-like protein 18 | ||||
STRING | XP_009618056.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11298 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-134 | GRAS family protein |
Publications ? help Back to Top | |||
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