PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499877.1
Common NameLs
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 410aa    MW: 46525.6 Da    PI: 7.1892
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499877.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.27.8e-132334102374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl....fsevsPi 90 
                     ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  s+  + l+p+++s+    s +  a l+     +++v+P+
  XP_016499877.1  33 RQLLISCAELISRSDFSAANRLLTILSTNSSPFGDSTERLVHQFTRALSIRLNRYISSATNFLTPNASSNVVesS-NDSALLQSsylsLNQVTPF 126
                     89****************************************************999999999888877544432.222222223556******* PP

            GRAS  91 lkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl..v 182
                     ++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R  +pp+lRiTg g+    + ++l++tg+rLakfA++lg++f+f++l  +
  XP_016499877.1 127 IRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFHPLliT 216
                     ****************998799***********************9.999**********....***************************9643 PP

            GRAS 183 akrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                      ++ +d ++   +++ + p+E+la+n+v+ lhrll+++  l+     +L+ +ks++Pkvv+++e+ea+hn++ Fl+rf+eal+yy+a+fdslea+
  XP_016499877.1 217 NNNDNDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREMLRI----FLHRIKSMNPKVVTLAEREANHNHPLFLQRFVEALDYYAAVFDSLEAT 307
                     3355555551115556777****************99999999....************************************************ PP

            GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrp 366
                     lp+ s+er++vE++++grei ++va+eg++rrerhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++   + s+s++lgW+++p
  XP_016499877.1 308 LPPSSRERMTVEQVWFGREIIDIVAAEGDKRRERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLSvsSTSNSFFLGWQNQP 402
                     ****************************************************************************98855779*********** PP

            GRAS 367 LvsvSaWr 374
                     L+s+S+Wr
  XP_016499877.1 403 LFSISSWR 410
                     *******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.1326387IPR005202Transcription factor GRAS
PfamPF035142.7E-12933410IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MLGSFGSSSQ SHDEEADDQR RRCSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST  60
NSSPFGDSTE RLVHQFTRAL SIRLNRYISS ATNFLTPNAS SNVVESSNDS ALLQSSYLSL  120
NQVTPFIRFS QLTANQAILE AINDNQQAIH IVDFDINHGV QWPPLMQALA DRYPPPTLRI  180
TGTGNDLDTL RRTGDRLAKF AHSLGLRFQF HPLLITNNND NDHDPSIISS IVLLPDETLA  240
INCVFYLHRL LKDREMLRIF LHRIKSMNPK VVTLAEREAN HNHPLFLQRF VEALDYYAAV  300
FDSLEATLPP SSRERMTVEQ VWFGREIIDI VAAEGDKRRE RHERFRSWEV MLRSCGFSNV  360
ALSPFALSQA KLLLRLHYPS EGYQLSVSST SNSFFLGWQN QPLFSISSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-623940926378Protein SCARECROW
5b3h_A2e-623940925377Protein SCARECROW
5b3h_D2e-623940925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9355810.0EU935581.1 Nicotiana tabacum lateral suppressor protein (Ls) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618056.10.0PREDICTED: scarecrow-like protein 18
RefseqXP_016499877.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A1S4CFB90.0A0A1S4CFB9_TOBAC; scarecrow-like protein 18
STRINGXP_009618056.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-134GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]