PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016499796.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 378aa    MW: 43060.6 Da    PI: 9.197
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016499796.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.2e-3277130255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtpeLH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+
  XP_016499796.1  77 PRLRWTPELHLRFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.24973133IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-3073131IPR009057Homeodomain-like
SuperFamilySSF466898.24E-1674132IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-2377132IPR006447Myb domain, plants
PfamPF002493.4E-1078129IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKRGSSAEDS KSSPKNQIEF EEEEEEEEEK EDDLETEENS KLPEGTRTSS SNSTVEENGK  60
KSTNSGGVRQ YVRSKTPRLR WTPELHLRFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQIS TDGRFLIENG DHHIFNLSQL PRLQGTFNQT SSSSLRYEDS  180
LWNRQANSSM YNPYNINIGG ASRINTRHGF SSHINNGHSQ GQLFPWNKTL QIEKKPQHFH  240
NQRFWSTQIG TSSTKQNLLM TLPIDRDRDR GRDQEIMKTQ MRTNNSLSLR GKGWTTEAGT  300
ITTSAPSKRK IQDLEVNLDL NLSLKITRED DDDHKKRLKA EEVGNLLSLS LFSSSATSMD  360
DKENNGGEKN TRMTSTQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-1778132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1778132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1778132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1778132357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499796.10.0PREDICTED: uncharacterized protein LOC107818319
TrEMBLA0A1S4CFA30.0A0A1S4CFA3_TOBAC; uncharacterized protein LOC107818319
STRINGXP_009791663.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-48G2-like family protein