PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016499159.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

BBR-BPC

Protein Properties

Length: 309aa MW: 34530.5 Da PI: 9.9236

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016499159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	318.1	2.8e-97	1	309	1	301
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd..........................maflqrdkala 68 md +g++ rn+g++epa + lk +lglqlmss+ e+ + r++ ++++++++++ +++ +rd++++ XP_016499159.1 1 MDGNGMNIRNWGFFEPAaTVLKGHLGLQLMSSMDEKPLFGNIRDHHHHHNHQTHQPHHptvmestnggafhhhrvcgisetpmpIEY-MRDSWVN 94 88888877******9999*********776554433333335555555555456677888999999999***99999.9** PP GAGA_bind 69 ernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 + + ++k+l++l ++ + +g++ l++t+s++s+q +++p+l + + +le+ +e+ +k+ k+q k+pk+kk XP_016499159.1 95 H-----KDYRDKYLNVLSGNH----HYLTGYGFLPETSSAQSMQIHEQPNLVKVEPD----PQLEEVCLERDIGGLAKKRGAGKSQLLKSPKSKK 176 9.....566789999888555....57789***********888887766655....3344445555556666666666677888888888 PP GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258 akk+++ +k +++++ +r++a++ks ++v+ng+++D+s +P+PvCsCtG+ +qCY+WG+GGWqSaCCtt++S yPLP++tkrrg+Riagr XP_016499159.1 177 AKKATRI---PKVESTPSV--PRARAPRKSAEVVINGITMDISVIPIPVCSCTGVAQQCYRWGCGGWQSACCTTNLSSYPLPMNTKRRGSRIAGR 266 8777773...333344444..79******************************************************************** PP GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 KmS gaf+k+LekLa+eGy++sn++DLk +WAkHGtnkfvtir XP_016499159.1 267 KMSLGAFTKVLEKLASEGYNFSNAIDLKPYWAKHGTNKFVTIR 309 ****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.6E-148	1	309	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.6E-101	2	309	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MDGNGMNIRN WGFFEPAATV LKGHLGLQLM SSMDEKPLFG NIRDHHHHHN HQTHQPHHPT 60 VMESTNGGAF HHHRVCGISE TPMPIEYMRD SWVNHKDYRD KYLNVLSGNH HYLTGYGFLP 120 ETSSAQSMQI HEQPNLVKVE PDPQLEEVCL ERDIGGLAKK RGAGKSQLLK SPKSKKAKKA 180 TRIPKVESTP SVPRARAPRK SAEVVINGIT MDISVIPIPV CSCTGVAQQC YRWGCGGWQS 240 ACCTTNLSSY PLPMNTKRRG SRIAGRKMSL GAFTKVLEKL ASEGYNFSNA IDLKPYWAKH 300 GTNKFVTIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009761371.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_009761378.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499158.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
Refseq	XP_016499159.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A1S4CDX5	0.0	A0A1S4CDX5_TOBAC; protein BASIC PENTACYSTEINE2-like
TrEMBL	A0A1U7V4R1	0.0	A0A1U7V4R1_NICSY; protein BASIC PENTACYSTEINE2-like
STRING	XP_009761371.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-82	basic pentacysteine 2