PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016499110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 459aa MW: 50404 Da PI: 4.629 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.2 | 4.5e-34 | 248 | 302 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ XP_016499110.1 248 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 302 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.956 | 245 | 305 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.2E-18 | 246 | 302 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-31 | 247 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-25 | 248 | 302 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-10 | 250 | 301 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-25 | 333 | 380 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MEARPAVSVQ SVVASQLSNC GASGALSSSF PMLPTVLGEK YPLLPDLQQA STEKELKQHP 60 GTFVSHLPSN SGAVGLMFSS SSGFSADLHF SSVPPQESHS GPAPFISQST NSETSILLPH 120 SGVLQSTASS QYLNENNEPW CIDPLPDFLD YSMNTPVQNS QLACSNKQSD WQEWADLVIN 180 EEDALTSNWN EIMADTSLAE TEMQDQEEKQ PSNFPMQQVQ TSQQIPAVAV ENSAIAPASS 240 PASGAATKQR MRWTPELHEA FVEAVNKLGG SERATPKGVL KLMKVEGLTI YHVKSHLQKY 300 RTARYKPEAS EESSEKKHSS IDDLSSLDLK TGIEITEALR LQMEVQKRLH EQLEIQRNLQ 360 LRIEEQGRYL QEMFEKQCKS MPGVDLAKGS SSTADDAFAQ LSDAVQSSSC KNDPGVSQVD 420 ISKEVDEKQK KREKEVGEPE TNITSTFDSP PSKRSKLDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-32 | 248 | 306 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016499110.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A1S4CD86 | 0.0 | A0A1S4CD86_TOBAC; protein PHR1-LIKE 1-like | ||||
STRING | XP_009781296.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-83 | phosphate starvation response 1 |