PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016498953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 38499.8 Da PI: 6.6238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 30.8 | 5.7e-10 | 101 | 144 | 18 | 58 |
-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 18 sefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 + r YYrC+ + +C ++k v+rs+++p v+e++Y ++H + XP_016498953.1 101 NSRKREYYRCARRhlsKCIATKMVKRSDTEPPVFEVIYGESHSC 144 56689******98889**************************98 PP | |||||||
2 | AP2 | 47.8 | 3.5e-15 | 283 | 331 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIr+p + +r++lg+f +Aa a++aa+ +++g XP_016498953.1 283 TYRGVRQRP-WGKWAAEIREP-----NrARVWLGSFENSHDAAVAYDAAAYRFYG 331 69*******.**********8.....44***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.4E-5 | 95 | 146 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.06E-8 | 101 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-9 | 101 | 144 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.605 | 101 | 143 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.4E-9 | 101 | 146 | IPR003657 | WRKY domain |
CDD | cd00018 | 1.06E-19 | 282 | 340 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-28 | 283 | 340 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-30 | 283 | 344 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-9 | 283 | 331 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 283 | 339 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-19 | 283 | 340 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-12 | 284 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-12 | 321 | 341 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MGEENCWERE VVITELTKGR ELMYQLQKHF NPMKQDVCQY LSVEILSSYD KALSLLNGTA 60 LSVMSKGKQI INSAPSSSTA KLVSPHLPVD SSTKSSDRPS NSRKREYYRC ARRHLSKCIA 120 TKMVKRSDTE PPVFEVIYGE SHSCGQESKN QNEELPEPVL TTEIQSESAD IADMVSTPNN 180 SFNNSSTGVV FSSNSNSNSL FNIANSDFIS TPTSSPHPDW NFLSFDDTTR LTALLNDGPE 240 NVSCTYKGVD FISTPTSDHN LLLDDTTSLT TLSKSAPENA RCTYRGVRQR PWGKWAAEIR 300 EPNRARVWLG SFENSHDAAV AYDAAAYRFY GKNARLNFPE RYIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 284 | 341 | 3 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016498953.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 isoform X2 | ||||
TrEMBL | A0A1S4CCS9 | 0.0 | A0A1S4CCS9_TOBAC; probable WRKY transcription factor 41 isoform X2 | ||||
STRING | XP_009587235.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-20 | ERF family protein |