PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016498898.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 1299aa MW: 150386 Da PI: 8.4687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016498898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.0006	1237	1274	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ +++ +L++l Pk +k s +iL +A ++I+ L+ XP_016498898.1 1237 SRMSEKLKKLQDLCPKM----DKQTSITDILDLAAQHIRTLE 1274 5899**********7....688*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14798	6.27E-21	385	496	No hit	No description
SuperFamily	SSF52540	5.35E-59	512	780	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00931	3.1E-73	532	807	IPR002182	NB-ARC
Gene3D	G3DSA:3.40.50.300	2.9E-15	536	698	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00364	5.6E-15	549	564	No hit	No description
PRINTS	PR00364	5.6E-15	622	636	No hit	No description
PRINTS	PR00364	5.6E-15	716	730	No hit	No description
SuperFamily	SSF52058	5.95E-25	847	1203	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.2E-17	919	1208	IPR032675	Leucine-rich repeat domain, L domain-like
PRINTS	PR00364	5.6E-15	1165	1181	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-6	1237	1282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00929	1237	1278	No hit	No description
SuperFamily	SSF47459	2.09E-6	1237	1281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043531	Molecular Function	ADP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1299 aa Download sequence Send to blast
MAHNDIEDML DHLRRIKRRG DVNVVKTETL EMELRFWRTF FKYPHTLLPD SLVEVRKKAK 60 LIAEMLYSVF GGIPGEYKTS LNVERLVSEL QEFSEDNGTS LIDNFELNDS YMFEYMDHLD 120 QNLNDAPRYL VRSITFFAKK INIPQKTDRY LRKVKVIQNR IRFIRYLYGA KINGYVDREK 180 LEGMHARIQF MADNVRQFCL ALWINKDRDD TSDIENKPPY LLCLVVIVEL EMKKIFLCEL 240 KASKFTQSRT FKNKKLPKGF SYQLHCFLVY LRDKKLDNFP TIVSARNIDV AIEFLLVFLS 300 DIPNHVISGN RLNEVLEKVG VLAGDILYVI QMKLLSGSTI KYDASKIDLG TMHILEKIED 360 LKAQVEERYY RSVIYKPSQF PTVGGLSFLD SLLRKLNEML KSKSGLDFML KPHIVILEKE 420 LSHLTSIFRD VAKVQHEHEI LKDLQRHTIN LAYEAEVSID SILSQCNALW YLFCSLPAIV 480 KEIKNIREKV TEMRFKNLLP LKPYSLIEPS KHPPNKHSNL RSDEEIVGFE NDTKSILRLL 540 IRGTNELDVI PIVGMGGQGK TTIAKKVYNN DNVVSHFDVQ AWCIISQIHN RRELLQEIFS 600 QVTGSANKVD EVGALADILR KSLVGKRYLI VLDDIWDGMA WDDLRLSFPD GRNGSRIVVT 660 TRLDKVAEDV KHHSDPYFLP FLTPEESREL LQKKVFQNEA CPPELNDVSL DVARRCKGLP 720 LVVVLVAGII KKKKMERSWW HEIKKALFSY LDRESKGYSR ATMQLSYDNL PEYLRPCLLY 780 MGMFPEDERI PVSKLISLWI AEGFVQNIES DRLMEEIAEG YLMDLIRSNV VMVSRRTYNG 840 KVKYCQVHDV VLHFCLERSR EETFILAVRG NIQPSDLKVS RVSFSKELSM FASKMRKPFH 900 QHLRSLITTN RGESLYWNRF SQVINLMRLL KVLDLSSHKF GCFSLATLKP LIHLKYVALF 960 IDTFDFCGKS HLPHLETLIL KCSMYTWLSE NFWKMKKLRH VEFTSAGLFL VRQIIDESSK 1020 LENLRILRGV TLTLGFDCLN VLVQRCPNLQ ELEITFLAYD SDEEMICLKL ESLTQLQSLR 1080 FFFRSSTVVP KLHLPSNVKK LLLCGPRIGS AIFFIAGLAN LEYLELREPN FLDSGEWCLG 1140 DITFPKLKLL KLSNLGISKW DASEESFPQL ETLVINGCND LEEIPLSFAD IPTLKQIKLM 1200 WCSHNKSLKA SAVRIKKEVE ENEGCDRIDL IIVMHQSRMS EKLKKLQDLC PKMDKQTSIT 1260 DILDLAAQHI RTLEDRVQNL KILSTEVENY KRGGKESTQ

Sequence ? help Back to Top

Protein Sequence Length: 1299 aa Download sequence Send to blast

MAHNDIEDML DHLRRIKRRG DVNVVKTETL EMELRFWRTF FKYPHTLLPD SLVEVRKKAK  60
LIAEMLYSVF GGIPGEYKTS LNVERLVSEL QEFSEDNGTS LIDNFELNDS YMFEYMDHLD  120
QNLNDAPRYL VRSITFFAKK INIPQKTDRY LRKVKVIQNR IRFIRYLYGA KINGYVDREK  180
LEGMHARIQF MADNVRQFCL ALWINKDRDD TSDIENKPPY LLCLVVIVEL EMKKIFLCEL  240
KASKFTQSRT FKNKKLPKGF SYQLHCFLVY LRDKKLDNFP TIVSARNIDV AIEFLLVFLS  300
DIPNHVISGN RLNEVLEKVG VLAGDILYVI QMKLLSGSTI KYDASKIDLG TMHILEKIED  360
LKAQVEERYY RSVIYKPSQF PTVGGLSFLD SLLRKLNEML KSKSGLDFML KPHIVILEKE  420
LSHLTSIFRD VAKVQHEHEI LKDLQRHTIN LAYEAEVSID SILSQCNALW YLFCSLPAIV  480
KEIKNIREKV TEMRFKNLLP LKPYSLIEPS KHPPNKHSNL RSDEEIVGFE NDTKSILRLL  540
IRGTNELDVI PIVGMGGQGK TTIAKKVYNN DNVVSHFDVQ AWCIISQIHN RRELLQEIFS  600
QVTGSANKVD EVGALADILR KSLVGKRYLI VLDDIWDGMA WDDLRLSFPD GRNGSRIVVT  660
TRLDKVAEDV KHHSDPYFLP FLTPEESREL LQKKVFQNEA CPPELNDVSL DVARRCKGLP  720
LVVVLVAGII KKKKMERSWW HEIKKALFSY LDRESKGYSR ATMQLSYDNL PEYLRPCLLY  780
MGMFPEDERI PVSKLISLWI AEGFVQNIES DRLMEEIAEG YLMDLIRSNV VMVSRRTYNG  840
KVKYCQVHDV VLHFCLERSR EETFILAVRG NIQPSDLKVS RVSFSKELSM FASKMRKPFH  900
QHLRSLITTN RGESLYWNRF SQVINLMRLL KVLDLSSHKF GCFSLATLKP LIHLKYVALF  960
IDTFDFCGKS HLPHLETLIL KCSMYTWLSE NFWKMKKLRH VEFTSAGLFL VRQIIDESSK  1020
LENLRILRGV TLTLGFDCLN VLVQRCPNLQ ELEITFLAYD SDEEMICLKL ESLTQLQSLR  1080
FFFRSSTVVP KLHLPSNVKK LLLCGPRIGS AIFFIAGLAN LEYLELREPN FLDSGEWCLG  1140
DITFPKLKLL KLSNLGISKW DASEESFPQL ETLVINGCND LEEIPLSFAD IPTLKQIKLM  1200
WCSHNKSLKA SAVRIKKEVE ENEGCDRIDL IIVMHQSRMS EKLKKLQDLC PKMDKQTSIT  1260
DILDLAAQHI RTLEDRVQNL KILSTEVENY KRGGKESTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6s2p_N	1e-71	523	862	7	347	NRC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016498898.1	0.0	PREDICTED: putative late blight resistance protein homolog R1A-3
TrEMBL	A0A1S4CCM7	0.0	A0A1S4CCM7_TOBAC; putative late blight resistance protein homolog R1A-3
STRING	XP_009777374.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-12	bHLH family protein