PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016498399.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 238aa    MW: 26518.2 Da    PI: 10.2158
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016498399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-104893454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +h ++Er+RR+riN  +++L++l P++     +K +K+ +L++Av  +k+L
  XP_016498399.1 48 THAMAERKRRERINAHLHTLKKLFPHL-----PKKDKSRVLTEAVTQLKEL 93
                    8*************************8.....699**********999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1335102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.1094493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-84798No hitNo description
PfamPF000104.2E-84893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1148104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-85099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.0E-6142210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MLSSLQGCNG FLQRANSGQF LHQRNNNNVV DEYGKSTRKN KSKDVALTHA MAERKRRERI  60
NAHLHTLKKL FPHLPKKDKS RVLTEAVTQL KELRKKVAQQ METQKDSEGN YNGNNGLSSF  120
FLPGENDEVS VNFSEESYND EQTVKATVCC EDRMGLNRDL SAAVRLVQGR VIKAEMATVG  180
GRTKAEMLVV LCKAGGGEKD TGQLRRALMA VVENRCLGLG SSLNLGRRFG DKKWACFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016498399.11e-176PREDICTED: transcription factor bHLH30-like
TrEMBLA0A1S4CBR71e-175A0A1S4CBR7_TOBAC; transcription factor bHLH30-like
STRINGXP_009591424.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137131315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-22bHLH family protein