PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016498265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 290aa MW: 32077.6 Da PI: 7.0995 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.9 | 3e-40 | 52 | 112 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCdst+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s XP_016498265.1 52 HDQTLKCPRCDSTHTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKKVS 112 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 50 | 110 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 53 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.217 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 58 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGITSLQVCM DSSNWLQDTI HEETELGSSS SPSGDIFTCS RPLIERKLRP QHDQTLKCPR 60 CDSTHTKFCY YNNYSLTQPR YFCKSCRRYW TKGGTLRNIP VGGGCRKNKK VSSKKALSNE 120 NANYQNPGSS SSSISNFPEM AYSHFTNFMG NNNNPSNFML ENPAPIDFME SKYEALMGSS 180 RNQDFVGNVD HLGMINGYGE INGIAPNFHA GLCSTFGLPM EGNNFGTMNY DGQNAIDVKP 240 NPKILSLEWH DQGCSNSGNK ESFGYFNGEL GSWTGLMNNG YGSSGTNPLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB971710 | 0.0 | AB971710.1 Nicotiana tabacum NtBBF3 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016498265.1 | 0.0 | PREDICTED: dof zinc finger protein DOF5.6-like | ||||
TrEMBL | A0A1S4CAV1 | 0.0 | A0A1S4CAV1_TOBAC; dof zinc finger protein DOF5.6-like | ||||
STRING | XP_009599905.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4895 | 22 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 6e-43 | Dof family protein |