PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497921.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 361aa    MW: 41084.7 Da    PI: 8.8575
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.95e-2578121144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  XP_016497921.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 121
                     79***************************************986 PP
2QLQ59.68.9e-211145236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FTa+Q+q+L++Q+l+yKy+++++PvPp+Ll  i+
  XP_016497921.1 11 PFTANQWQELEHQALIYKYMVSGMPVPPDLLYTIR 45
                    8*****************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.2E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2081146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.5E-161144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94178122IPR014977WRC domain
PfamPF088793.3E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMSTTARSRF PFTANQWQEL EHQALIYKYM VSGMPVPPDL LYTIRRSLDS SLSSKLILHQ  60
PHHIGWNCFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EIMTTTSTNT STTTRPISTA TNTTTPTAIS ILSINKNTNN ISSSSPTSSL HSFSYLTSTH  180
EPHQYPFLYP HSSSSRPSPA AIGLESSPYS RNGYGDGMKE DVDEHIFFSE TSGTVRSTCG  240
SNSVDDTWQL SPLTMGSPMK QRTYSLSQNT GHSVSSYLQL QSLNESSKDH QQYFHDVKSM  300
KIEDQQQQPK KVMHHFFDEW PKDNKDSWLD SEDKFSGLSK TQLSISIPNP SHDFFITTNE  360
K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755192e-78HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009596803.10.0PREDICTED: growth-regulating factor 1-like
RefseqXP_016497921.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A1S4C9Y30.0A0A1S4C9Y3_TOBAC; growth-regulating factor 1-like
STRINGXP_009596803.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-54growth-regulating factor 5