PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497879.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 480aa    MW: 53746.2 Da    PI: 7.5303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-193985148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++++++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   XP_016497879.1 39 KGPWTQEEDDKIIELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 85
                     79******************************.*************97 PP
2Myb_DNA-binding569.3e-1891134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l+da++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_016497879.1  91 KDAWTLEEELALLDAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 134
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.414433IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.8E-121449IPR009057Homeodomain-like
PROSITE profilePS5129432.0743489IPR017930Myb domain
SuperFamilySSF466891.09E-3136132IPR009057Homeodomain-like
SMARTSM007174.1E-183887IPR001005SANT/Myb domain
PfamPF002497.3E-193985IPR001005SANT/Myb domain
CDDcd001671.51E-154185No hitNo description
Gene3DG3DSA:1.10.10.602.0E-275093IPR009057Homeodomain-like
SMARTSM007174.7E-1790138IPR001005SANT/Myb domain
PROSITE profilePS5129422.56990140IPR017930Myb domain
PfamPF002491.6E-1591134IPR001005SANT/Myb domain
CDDcd001677.60E-1393133No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2394140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
KIIWFYSNPD VHAAEFFPDR SEVQCLHRWQ KVLNPDLVKG PWTQEEDDKI IELVARYGPT  60
KWSVIAKSLP GRIGKQCRER WHNHLNPNIK KDAWTLEEEL ALLDAHRIYG NKWAEIAKVL  120
PGRTDNAIKN HWNSSMKKKL DFYLATGNLP SVGRDGLQNG CKDTTGTASA EKALVCSHKG  180
SDSTELASSG TTDVCKIENC DKNRQDAKLL VANIDASKSG PKNESADSEV VRWEAESPVM  240
DSIHVKQIKE IKFEGYGKNS EVDHFKVIET PFSCEIPTYG TLYYEPPQLE SCISMDSDHL  300
NIRWAHCESD SSPSLSPSSF LTPPSSLKGS SLYSQTPESI LKTAARSFPN TPSIFRKRKL  360
NYTPGNKIGN ADGDTHKDEV HDACEDKQTD SSEKYVMIRG SSSKNPSYNG IGPCDTQAFN  420
ASPPYRIRSK RKSIFRSVEK QLKFAFDNEQ HNTSTGINDS TVKEISHVAD CLRATRMGIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-631414033159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-631414033159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497879.10.0PREDICTED: uncharacterized protein LOC107816660, partial
TrEMBLA0A1S4CA970.0A0A1S4CA97_TOBAC; uncharacterized protein LOC107816660
STRINGXP_009787902.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-102myb domain protein 3r-5