PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497877.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 217aa MW: 24220.3 Da PI: 5.6854

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.6e-15	58	108	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + +Wv+e r p +k+ r++lg++ ae+Aa+a++ a+ +l+ XP_016497877.1 58 PVYRGVRKRN-SDKWVCEMRLP---NKKSRIWLGTYPIAEMAARAHDVAAIALRS 108 68***888.7*****8...347********************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.3E-11	58	107	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-18	59	118	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.1E-28	59	118	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-24	59	122	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.205	59	116	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.9E-7	60	71	IPR001471	AP2/ERF domain
CDD	cd00018	5.52E-27	60	118	No hit	No description
PRINTS	PR00367	6.9E-7	82	98	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MDIFRSYYSD SLTESSSLSD NSSSPCNRAN LSDEEVLLAS NNPKKRAGRK KFHETRHPVY 60 RGVRKRNSDK WVCEMRLPNK KSRIWLGTYP IAEMAARAHD VAAIALRSRS ACLNFADSVW 120 KLPIPASTDA KDIQRAAAEA AEAFRPSESE TISGESCAGT TPETLENDKF FMDEEALFCM 180 PGFLASMAEG LMLPPPHFVE VGDYVEAADM HLWSYTI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:12376631}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609482.1	1e-162	PREDICTED: dehydration-responsive element-binding protein 1D-like
Refseq	XP_016497877.1	1e-162	PREDICTED: dehydration-responsive element-binding protein 1D-like
Swissprot	Q9FJ93	1e-69	DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBL	A0A1S4C9G0	1e-160	A0A1S4C9G0_TOBAC; dehydration-responsive element-binding protein 1D-like
STRING	XP_009609482.1	1e-161	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA263	24	183

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51990.1	2e-65	C-repeat-binding factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guttikonda SK, et al. Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean. Mol. Biol. Rep., 2014. 41(12): p. 7995-8008 [PMID:25192890] Zhang T, et al. Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana. Plant Physiol. Biochem., 2015. 94: p. 153-64 [PMID:26093308] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]