PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016497816.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 27550.9 Da PI: 8.3376 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.6 | 2.7e-12 | 110 | 151 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ XP_016497816.1 110 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 151 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.6E-5 | 109 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-6 | 109 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-8 | 110 | 154 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.41E-11 | 111 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-7 | 112 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MVSIRRRKLL GLCSGRSSFL VPLPKFSENG HIAENCFLNN KSTSVHPMPS TDIDESKEKT 60 AVKVVPGSSK GHASGSLIEQ TAQQFPVIPE VKRRKRHRRK HFENQEPCLM RGVYFKNMKW 120 QAAIKVDKKQ IHLGTVGTQE EAARLYDRAA FMCGREPNFE ISEEEKQELR QFKWDEFLAF 180 TRSAITNKKT RRRSGAGSRR KSEPLTSTPN SEEEEEEEEE GGEPESNGFS ASEDIEQDIS 240 FS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254066 | 6e-87 | AC254066.8 Solanum lycopersicum strain Heinz 1706 chromosome 9 clone sle-10p22 map 9, complete sequence. | |||
GenBank | HG975448 | 6e-87 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 6e-87 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610255.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_009610256.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_009610257.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_016497815.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
Refseq | XP_016497816.1 | 1e-180 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A1S4C9K2 | 1e-178 | A0A1S4C9K2_TOBAC; ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
STRING | XP_009610255.1 | 1e-179 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-45 | ERF family protein |