PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497649.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 285aa    MW: 31827.9 Da    PI: 9.4954
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-203181256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  XP_016497649.1 31 KFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 81
                    799******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-323188No hitNo description
PROSITE profilePS5103220.5083188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-283188IPR001471AP2/ERF domain
SMARTSM003804.9E-363194IPR001471AP2/ERF domain
PfamPF008472.4E-153181IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-203188IPR016177DNA-binding domain
PRINTSPR003672.7E-73243IPR001471AP2/ERF domain
PRINTSPR003672.7E-75470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAGTETTKTT TITNSNTTKS SPQLNKSISR KFVGVRQRPS GRWVAEIKDS SQRVRLWLGT  60
YDTPEEAARA YDEAARALRG ENARTNFAST LSNPNSDHDQ SINMLQSNDS KHGLSFSSLK  120
AKLSKNLQSI MARNSENKST SKSRVSDHFT FARIFHFKNN YHQYQSHHMD MKKIEKVVQP  180
SIRVLPQVTD NNNNNDLSSW ENLSVSDCSS EWAAFRQHGL DSDNGSSDAS EYFLGSDSMA  240
GTWVSSPDIM SSSSEGSRSK RFKVSSSVMV PPTFSESPLH GDNYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1431871471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598443.10.0PREDICTED: ethylene-responsive transcription factor ERF010-like
RefseqXP_016497649.10.0PREDICTED: ethylene-responsive transcription factor ERF010-like
TrEMBLA0A1S4C9L30.0A0A1S4C9L3_TOBAC; ethylene-responsive transcription factor ERF010-like
STRINGXP_009598443.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125641721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-17related to AP2 11