PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497576.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 713aa    MW: 78562.6 Da    PI: 5.5474
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS438.55e-1343477121374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilk 92 
                     lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla    + +++++a +p +  + ns e l++++++++++P++k
  XP_016497576.1 347 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAAtlaTKPSTSSAPKPFNPFPPNSLEILKIYQILYQACPYVK 441
                     68***************************************************98443456677777666666778******************* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l+vpfef++ v ++le
  XP_016497576.1 442 FAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLE 531
                     *********************************************************....9**************************.7***** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl++++++ + gEalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r
  XP_016497576.1 532 DLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQR 620
                     **************************9......444557******************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  XP_016497576.1 621 AKLEQYIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 712
                     *******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.613321692IPR005202Transcription factor GRAS
PfamPF035141.7E-131347712IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLPLDESSLA SSESKKVTPV  60
TSDFELNCGS LAPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNH  120
PSPQPASSFS TTTHSNNNNN NNNYNIYAHH QGIHGQSMMM CSPPRSPLGP NYHSSNKGKG  180
LSPLQKVFNS PNNQFMQIES FKLPALESFL DDDYDKEEDL ASSYLALKVS GSGVAGSSSE  240
SFDALSVVPD LLECLALPNS SSNGPGSFMG SLLGDTSAVP DDEIFQTGSI APLSQQLQQE  300
RQHEKQQKQR PITHAQPPMT QQQHTQIINH NLVVAAPDQE QDSGLQLVHL LLACAEAVSK  360
EDYMLARRYL HHLNRVVTPI GDSMQRVASC FTEALTARLA ATLATKPSTS SAPKPFNPFP  420
PNSLEILKIY QILYQACPYV KFAHFTANQA IFEAFEAEER VHVIDLDILQ GYQWPAFMQA  480
LAARPGGAPF LRITGVGPSP EAVRETGRCL TELAHSLHVP FEFHPVGEQL EDLKPHMFNR  540
RIGEALAVNS VNRLHRVPVN CIGNLLAMIR DQAPNIVTIV EQEASHNGPY FLGRFLEALH  600
YYSAIFDSLD ATFPADSSQR AKLEQYIFAP EIMNIVSCEG AERVVRHERL EKWRRLMEGK  660
GFKGVPLSAN AVTQSKILLG LYSCDGYKLT EDNGCLLLGW QDRAILAASA WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-9735471126378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803754.10.0PREDICTED: DELLA protein RGL2-like
RefseqXP_016497576.10.0PREDICTED: DELLA protein RGL2-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A1S4C8Z10.0A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like
TrEMBLA0A1U7YX550.0A0A1U7YX55_NICSY; DELLA protein RGL2-like
STRINGXP_009803754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]