PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497545.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 263aa    MW: 29608.1 Da    PI: 7.5968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-20136185356
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++ge
  XP_016497545.1 136 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEEAARAYDKKAIEFRGE 185
                     9*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.32E-22135194IPR016177DNA-binding domain
PROSITE profilePS5103223.907135192IPR001471AP2/ERF domain
SMARTSM003801.4E-36135198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32135193IPR001471AP2/ERF domain
CDDcd000182.40E-31136194No hitNo description
PfamPF008476.6E-12136185IPR001471AP2/ERF domain
PRINTSPR003671.7E-11136147IPR001471AP2/ERF domain
PRINTSPR003671.7E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSNINYLEFQ DNRFSQESKA VQDSQLQENK KCSITHKLTQ DQEFYIMVSA LRHVICGADG  60
KTDGEAAQLI REVENASAAT SASILPRRSI VEPTVSAATY LACHIGSSTT TSFHVKRENL  120
ELQKGRRRRR NTKKEYRGVR QRPWGKWAAE IRDPHKAQRV WLGTFITAEE AARAYDKKAI  180
EFRGEKAKTN FPISEYAAAA TTVTDHNNKL PMVVEELQVQ KGVNNGIVAG DDNGESNVQT  240
GDDFWDTLED DGLVKWITKD MSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21134193464ATERF1
3gcc_A2e-21134193464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497545.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S4C8T00.0A0A1S4C8T0_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009772463.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-30ERF family protein