PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497460.1

Common Name

NtBBF1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 264aa MW: 29045.1 Da PI: 8.2028

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.4e-40	32	93	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss XP_016497460.1 32 KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 93 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	18	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.7E-34	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDTSHWPQGI GLVKAVEPSK PVPTERKPRP QKEQAINCPR CNSTNTKFCY YNNYSLSQPR 60 YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR SSSSSNNSSS STSSSYKKIP DLTIPTSSQN 120 PKIINEPHDL NLAFNPSATS NFSNISEFMA LPLMNPNSTT SFMSSIMPQL SDSNNIMYSS 180 SSTGLPNLHD LKPTLNFSLD GFDNNNGYGS LQGETAGAKL FFPLDDLKNV STPNDDHEFD 240 EQNRGQAAES HGFWNGMLGG GSSW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB971708	0.0	AB971708.1 Nicotiana tabacum NtBBF1 mRNA for Dof zinc finger protein, complete cds, cultivar: Samsun NN.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312901.1	0.0	dof zinc finger protein DOF1.8-like
Refseq	XP_009801284.1	0.0	PREDICTED: dof zinc finger protein DOF1.8-like
TrEMBL	A0A068PXR9	0.0	A0A068PXR9_TOBAC; Dof zinc finger protein
TrEMBL	A0A1U7YPX6	0.0	A0A1U7YPX6_NICSY; dof zinc finger protein DOF1.8-like
STRING	XP_009801284.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	1e-41	Dof family protein