PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016497268.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 329aa MW: 36490.9 Da PI: 8.5756

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016497268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.9	4.3e-33	164	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+a+C vkk+vers+ed+++v++tYeg H+h+ XP_016497268.1 164 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTATCGVKKRVERSSEDTSIVVTTYEGIHTHP 222 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	149	224	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-29	156	224	IPR003657	WRKY domain
PROSITE profile	PS50811	30.71	159	224	IPR003657	WRKY domain
SMART	SM00774	4.2E-39	164	223	IPR003657	WRKY domain
Pfam	PF03106	4.5E-26	165	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MLLIKSMADK ENKLKPDTSS LEISTFSDQI PASTYSLFDM PTCETEKGSS LSLMFSSHPI 60 TTPSIFDLLQ PPPPPPVPLL VPSQLKIVNK IPSSEIVNTP NSSSISSSST EAAANDDQLQ 120 ATTKTVDDDD EHKNKKQLKP KKKNQKRQRE PRFAFMTKSE VDHLDDGFRW RKYGQKAVKN 180 SPFPRSYYRC TTATCGVKKR VERSSEDTSI VVTTYEGIHT HPCPITPRTS IGILPEATAY 240 GGSIGGGGGS SSLFIPQFHY QASQQQQQQT YFQTPTLPIN FISTSDSSLY SSQERRFSPS 300 TSSSSSLARD HGLLQDMVPS QMRRDPKEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	157	224	10	77	Probable WRKY transcription factor 4
2lex_A	2e-25	157	224	10	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016497268.1	0.0	PREDICTED: probable WRKY transcription factor 48 isoform X4
Swissprot	O22900	9e-55	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A1S4C7Z7	0.0	A0A1S4C7Z7_TOBAC; probable WRKY transcription factor 48 isoform X4
STRING	XP_009626377.1	1e-175	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	5e-48	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]