PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016497238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25724.8 Da PI: 6.2861 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 41 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e+r+ps+ +kr++lg++ tae+Aa+a++ a+++l+g XP_016497238.1 41 PVYRGVRRRN-NDKWVCELREPSK---QKRIWLGSYPTAEMAARAHDVAALALRG 91 68*****887.8*********964...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 41 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 42 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 42 | 101 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.667 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-27 | 42 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-7 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.66E-28 | 43 | 101 | No hit | No description |
PRINTS | PR00367 | 5.2E-7 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MNNSSSSIRV AVSDEEDINI LALRKPKKRA GRKKFKETRH PVYRGVRRRN NDKWVCELRE 60 PSKQKRIWLG SYPTAEMAAR AHDVAALALR GQLATLNFAD SAWRLQMPAS KDPKDLHKAA 120 AKAAEALWPG EEADVNSRGA ANTGNGNEEM KVVSQEENAA YNCTQNIVTA ENVLYSNSCS 180 EVGMLGTQEW QAYMEERSLF SPNPCCLGSC FSWDDDMESD VEVSLWSYSV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497238.1 | 1e-172 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9LN86 | 5e-53 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A1S4C7W6 | 1e-170 | A0A1S4C7W6_TOBAC; dehydration-responsive element-binding protein 1E-like | ||||
STRING | XP_009777001.1 | 1e-145 | (Nicotiana sylvestris) | ||||
STRING | XP_009588056.1 | 1e-146 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 1e-31 | ERF family protein |
Publications ? help Back to Top | |||
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