PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016497179.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 157aa MW: 18561.4 Da PI: 9.7301 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.3e-28 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKK +E+SvLCda+va+i+fs +gkl+eys+ XP_016497179.1 2 KRIENKISRQVTFSKRRLGLLKKTHEISVLCDADVALIVFSAKGKLFEYST 52 79***********************************************96 PP | |||||||
2 | K-box | 71.7 | 2.2e-24 | 69 | 146 | 2 | 79 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 ++++ ++++++ ++++ e+ kL ++ie Lqr++Rh++GedL+s l+e + LeqqL+++lk+iR++K + +q XP_016497179.1 69 AERKLNANDSEPKQNWTMEYPKLMSRIELLQRNIRHYMGEDLDSFCLREFHGLEQQLDTALKRIRARKGLAYEKQRVC 146 5666777888999*******************************************************9888887655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.4E-29 | 1 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.44E-36 | 1 | 69 | No hit | No description |
SMART | SM00432 | 1.7E-28 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.703 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-24 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-16 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-16 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-18 | 78 | 140 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.443 | 81 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MKRIENKISR QVTFSKRRLG LLKKTHEISV LCDADVALIV FSAKGKLFEY STESSMESIL 60 ERYESYSYAE RKLNANDSEP KQNWTMEYPK LMSRIELLQR NIRHYMGEDL DSFCLREFHG 120 LEQQLDTALK RIRARKGLAY EKQRVCHHQK GGICWPK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 9e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 9e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 9e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 9e-17 | 1 | 66 | 7 | 71 | Myocyte-specific enhancer factor 2A |
6byy_A | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_B | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_C | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6byy_D | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 67 | 8 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016497179.1 | 1e-115 | PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
Swissprot | D7SMN6 | 8e-71 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A1S4C894 | 1e-113 | A0A1S4C894_TOBAC; truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
STRING | XP_009616788.1 | 8e-90 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 3e-66 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|