PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497099.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 373aa    MW: 41656 Da    PI: 4.6233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497099.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-102993391055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR++iN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  XP_016497099.1 299 RRRREKINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 339
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.046289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-14291355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-13294349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.47E-11298343No hitNo description
PfamPF000101.6E-7299339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEQIGAFFDE EWESLTKLFS STETADFMLQ LHGDQGSLFA INARENAGSG YENGPPQSAL  60
YQLGDEQHEA NTSFQYFSQE SSITSCGSDG IFFTNNSNHD IDHDVNNQLL QVAINNQPDD  120
QSIDFFIMDN KNNLENLSIN FPDDTNDMDS PSSKEEMVCD QLDNVGISPV SSKEMQLKRK  180
FDKIALQSSS KEQKLKEELP ENPKKKSRGS SQDAQKNKKK AQPKGKKNQK ITQINNEEGE  240
DQEANNAAIQ NGQSSSCCSS EDDSNASQEL NGGAISSKSK GKSRASRGAA TDPQSLYARR  300
RREKINERLR ILQNLVPNGT KVDISTMLEE AVTYVKFLQL QIKLLSSDEL WMYAPIAYHG  360
MDIGLYQKMM PSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497099.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A1S4C8250.0A0A1S4C825_TOBAC; transcription factor bHLH85-like
STRINGXP_009629598.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-32root hair defective 6-like 4