PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 583aa MW: 66206 Da PI: 4.9082 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 294.6 | 2.6e-90 | 211 | 581 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 lv+lLl++Ae v++++++la++l++r as++g+p+qRl +yf++AL++r+ rs+ + + + ++ + + +a+ + +++ P+ XP_016496726.1 211 LVHLLLAAAEEVNNQQFHLARKLISRCVWVASESGSPVQRLSFYFAKALEERIDRSTGKYTCTDEDRHL---KyiktmALGTNSAFLTCHQLLPF 302 68*****************************************************33332222222222...122222333344555589***** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++ +++ q+Il+ v +++++H iDf+i G+QW L+qaLa+++e p l+iT+vgs ++ke+ e tg+ L++fA++lg++f+f+++ + XP_016496726.1 303 SQVMQFAGVQTILDNVRSAKKIHLIDFNIRSGIQWTVLMQALAEKSECPIeLLKITAVGS---TEKEKFEVTGNTLHSFATSLGLSFSFDIVFLS 394 **********************************************7665499*******...579***************************** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +++d++ e+ +++ +E++aV + l ++ ++ +le+ ++k v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y a+fd++e + r+s XP_016496726.1 395 DMKDFKKESVNIEADETVAVYCNTVLRTMIPKPDCLEN----LMKGVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGAFFDCFEDCMDRDS 485 ******************************99999999....***************************************************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r+++E ++g+ i+n+va+eg+er+ r+ +le Wr+ + ++G+ + +lse+a qa+l+l++++ + +++++ + l++gWk+ p+ s+S W XP_016496726.1 486 PCRRTIEGLYFGEGIRNIVAAEGKERFTRNVKLEVWRAFFARFGMVEEELSESAWYQANLILKQFAqGSCCNIHKDGKGLIIGWKGTPIHSLSIW 580 ******************************************************************77779************************ PP GRAS 374 r 374 + XP_016496726.1 581 K 581 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.169 | 185 | 560 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.0E-88 | 211 | 581 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MANVSISNDN FSDFQGGHFH LKAYERNELV VEDPWFELED CADIDSVYSM CDLNNEENTS 60 NEQVTTNLLE DQKQSISNWM QGYFSTNTDQ IKSSIEAPKN DDFQPQVLQL IGNSSNEKSN 120 PFSLASFELL NNYGRLIKKS REENSSIYNA LSYEARACNN NKLSTEEILL VAGERYIRYS 180 TQRLDGLSMF IYPYGSALSG LSIEETRDME LVHLLLAAAE EVNNQQFHLA RKLISRCVWV 240 ASESGSPVQR LSFYFAKALE ERIDRSTGKY TCTDEDRHLK YIKTMALGTN SAFLTCHQLL 300 PFSQVMQFAG VQTILDNVRS AKKIHLIDFN IRSGIQWTVL MQALAEKSEC PIELLKITAV 360 GSTEKEKFEV TGNTLHSFAT SLGLSFSFDI VFLSDMKDFK KESVNIEADE TVAVYCNTVL 420 RTMIPKPDCL ENLMKGVRSI GPTVIVIGEV EANHNSPSFL NRFIETLFFY GAFFDCFEDC 480 MDRDSPCRRT IEGLYFGEGI RNIVAAEGKE RFTRNVKLEV WRAFFARFGM VEEELSESAW 540 YQANLILKQF AQGSCCNIHK DGKGLIIGWK GTPIHSLSIW KFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-42 | 240 | 581 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238918 | 0.0 | AC238918.11 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210f9 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772108.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
Refseq | XP_016496726.1 | 0.0 | PREDICTED: scarecrow-like protein 18 | ||||
TrEMBL | A0A1S4C6M5 | 0.0 | A0A1S4C6M5_TOBAC; scarecrow-like protein 18 | ||||
TrEMBL | A0A1U7W0H8 | 0.0 | A0A1U7W0H8_NICSY; scarecrow-like protein 18 | ||||
STRING | XP_009772108.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-49 | RGA-like 1 |