PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496498.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 373aa    MW: 41414.4 Da    PI: 5.0775
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57375.59.6e-2446138297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                     +f+r+w+e Dei +LqGl+d     g+  +  d++ fy  +++ +s  ++ksql+eK+rrL+kKf    ++ ++g ++s+ ++hd+  ++ls+++
  XP_016496498.1  46 KFHRIWTEPDEIRFLQGLLDD----GSLLFPrDLNIFYTRFSNTMSQPYTKSQLSEKLRRLRKKFWVIYSRLSKGLDMSLLSPHDRALYDLSRQL 136
                     699*****************8....7766666*************************************************************** PP

          DUF573  96 Wg 97 
                     W+
  XP_016496498.1 137 WH 138
                     *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-2547138IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDSTLPLSQS PTDTASKLPI KRKTTDDPFI SSTATGSDPE KPPPFKFHRI WTEPDEIRFL  60
QGLLDDGSLL FPRDLNIFYT RFSNTMSQPY TKSQLSEKLR RLRKKFWVIY SRLSKGLDMS  120
LLSPHDRALY DLSRQLWHPD FAHTSPFNAG KSKKSNLVGV KVSLLPTIPS APGPGQGLNQ  180
YDTGPGQGSF LPNAPYVSGP DRNKGSGQDP NQDGTVPYQD KLSMDTDPLS VGNSNRITGK  240
DPTHDGVSVS KENVEVGEVN NENNDEIGEF CDEDGKLSEV NVVFESGDVG DKQVRCSCLD  300
GPVRVGIGCG IGEIAAKVVM DVFDECLKDY KNGGFLKEEN LDKFEERWKE QRVAELDVLA  360
RRLRLVLEQS LQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797633.10.0PREDICTED: uncharacterized protein LOC104244032
RefseqXP_016496498.10.0PREDICTED: uncharacterized protein LOC107815434
TrEMBLA0A1S4C5X90.0A0A1S4C5X9_TOBAC; uncharacterized protein LOC107815434
TrEMBLA0A1U7Y3C50.0A0A1U7Y3C5_NICSY; uncharacterized protein LOC104244032
STRINGXP_009797633.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128221921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-18DNA-binding storekeeper protein-related transcriptional regulator