PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016496460.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 376aa    MW: 41211.1 Da    PI: 4.9028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016496460.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-0863104346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+ E +ll++   ++G + W+++a+ +  +++  +c+s++ +
   XP_016496460.1  63 VWTEAETLLLLESALKHGDD-WDLVAQNVK-TKSKLDCISKLIQ 104
                      6*****************88.********9.*********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.95E-859114IPR009057Homeodomain-like
PROSITE profilePS5129316.34759110IPR017884SANT domain
SMARTSM007171.5E-660108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-46099IPR009057Homeodomain-like
PfamPF002491.6E-863104IPR001005SANT/Myb domain
CDDcd001671.91E-564101No hitNo description
PfamPF164953.2E-16279356IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MDQQKKESVV CDSCKEQCAS GHYEYIKNAS YNLCEKCFKS GNYDKDKLAD EFKLMDGENS  60
KAVWTEAETL LLLESALKHG DDWDLVAQNV KTKSKLDCIS KLIQLPFGDL MLGSIHKKIK  120
LLDTNGEVST GDQAQGAISE SGETPGNQSH EQNQEHQQNG DAETETPPLK KIRRAPISEA  180
SSFLMKQVAR ISGAVGPHIT ASAAEAAVTA LCYENQCSTD IFDEDDDGLG SIADISETER  240
GSQDESAKGE EKPASSKTEV AVSQRNTIPL TLRMRAATAT ALGAAAAHAK LLADQEEREV  300
EYQVSTLVEA QVKKLQRKMK HVEALNLMME KQHAQMKELE ESLVTERMDI LQKIFSVGVS  360
RWSDHASAKS QSSSIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754421e-149HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016496460.10.0PREDICTED: SWI/SNF complex subunit SWI3A-like
TrEMBLA0A1S4C5K30.0A0A1S4C5K3_TOBAC; SWI/SNF complex subunit SWI3A-like
STRINGXP_009629546.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA985833