PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016496267.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 827aa MW: 94936.8 Da PI: 7.4861

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016496267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.6	9.1e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r+ ++++t+Cka+++vk+++dgkw+++++ ++HnHel p XP_016496267.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGATPESDAG---TSRRPSVKKTNCKASMHVKRKRDGKWYIHEFIKDHNHELLP 153 9*************************************999888...7788899*****************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-25	67	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-26	273	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.027	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.3E-6	560	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.1E-8	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MVDHGVVVQS SLQVIGDMVD AVDNTCHNRD GGVATSPKRS IAGVEGNADL EPRDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGATPESD AGTSRRPSVK 120 KTNCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ 300 PMLLGCALVA DETKPTFVWL MKTWLRAVGG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA 360 LWHVLERIPD ILAHVIKQHE NFMEKFSKCI FNSVTDEQFD LRWWKMVSRF ELQENEWIHT 420 LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE 480 EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGETV 540 TFRVNDCEKN ENFMVMWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK 600 RWTKDAKNRQ LLLEETERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC 660 VNVNNKSSTL TECSSSSIGL RDLEQDTQGI HATKTSRKKN TNKKRKVHTE PEAAIVEAQD 720 SLQQMGNLSV GGMTLNGYYG TQQNVQGLIQ LNLMEPPHDG YYVNQQNMQG LGQLNTIAPG 780 HDGFFGSQQS IPGLGHLDFR QPSFTYGLQD EPSLRASQLH GNSARHA

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MVDHGVVVQS SLQVIGDMVD AVDNTCHNRD GGVATSPKRS IAGVEGNADL EPRDGIEFES  60
HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGATPESD AGTSRRPSVK  120
KTNCKASMHV KRKRDGKWYI HEFIKDHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ LDRGRCLSLE EGDAQVMLEY FMHIQRENPY  240
FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY TKSNEKMPFV LFVGVNHHCQ  300
PMLLGCALVA DETKPTFVWL MKTWLRAVGG QAPKVMITDQ DKSLKAAIEE VFPCSRHCFA  360
LWHVLERIPD ILAHVIKQHE NFMEKFSKCI FNSVTDEQFD LRWWKMVSRF ELQENEWIHT  420
LYEERRKWVP AYMRGSFFAG MSTAQRSESI SSFFDKYIHK KISLKEFMRQ YGMILQNRYE  480
EEAVADFEIL QKHPALKSPS PWEKQMSTIY THAIFRKFQV EVLGVVGCHP KKEAENGETV  540
TFRVNDCEKN ENFMVMWNEA KSDVSCSCLL FEYKGFLCRH AMNVLQICGL PSIPSQYILK  600
RWTKDAKNRQ LLLEETERIT RVQRYNDLCR RAIELGEEGS LSEESYGIAF RVLDEALKDC  660
VNVNNKSSTL TECSSSSIGL RDLEQDTQGI HATKTSRKKN TNKKRKVHTE PEAAIVEAQD  720
SLQQMGNLSV GGMTLNGYYG TQQNVQGLIQ LNLMEPPHDG YYVNQQNMQG LGQLNTIAPG  780
HDGFFGSQQS IPGLGHLDFR QPSFTYGLQD EPSLRASQLH GNSARHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016496264.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016496265.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016496266.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016496267.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016496268.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S4C507	0.0	A0A1S4C507_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
STRING	XP_009618573.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]