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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016496209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 213aa MW: 24300.1 Da PI: 5.8834 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.5 | 1.1e-26 | 27 | 81 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr rWt + H++Fveav++LGG+ +AtPk+i++lm+ +++t h+kSHLQkYR XP_016496209.1 27 KPRFRWTVKHHDHFVEAVNELGGPFEATPKNIMKLMDDDDITSGHIKSHLQKYRQ 81 79****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.45E-14 | 26 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 26 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-21 | 27 | 82 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGESGKEQKG EETSEKPVVP SHDLNRKPRF RWTVKHHDHF VEAVNELGGP FEATPKNIMK 60 LMDDDDITSG HIKSHLQKYR QSKDIISTPK TSKVKRSEKN EAAVHMLHDK GEMQMIRKTL 120 NTEIDMQGRS NMSLEITNEA EQKENLEAEE IVRQEMQADA TTSWIELQTK EGGSKLKTYS 180 DQSEGSKKNI SKFFTSEKEQ LDLNFPAAAP DQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-13 | 27 | 83 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009605090.1 | 1e-157 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1 | ||||
Refseq | XP_009605091.1 | 1e-157 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1 | ||||
Refseq | XP_009605092.1 | 1e-157 | PREDICTED: protein PHOSPHATE STARVATION RESPONSE 3-like isoform X1 | ||||
Refseq | XP_016496207.1 | 1e-157 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_016496208.1 | 1e-157 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Refseq | XP_016496209.1 | 1e-157 | PREDICTED: protein PHR1-LIKE 1-like | ||||
TrEMBL | A0A1S4C4X0 | 1e-156 | A0A1S4C4X0_TOBAC; protein PHR1-LIKE 1-like | ||||
STRING | XP_009605090.1 | 1e-157 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18240.4 | 2e-18 | myb-related protein 1 |